DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0016043
GenePdxdc1
Synonyms
Desc.pyridoxal-dependent decarboxylase domain containing 1
LocusNM_001039533 chr16:13834023-13903228(-)
NM_053181 chr16:13835793-13903228(-)
DB links


Entrez 94184
MGI 1920909
Ensembl ENSMUSG00000022680
Vega OTTMUSG00000024509
Featureprotein-coding
GO(BP)
  •   1 Terms
GO(MF)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2016516
(v2.0)
Pdxdc1NM_001039533,NM_001291017,NM_05318194184
113.43731.943646.184830.441519.317120.57718.230251.536120.008819.2511
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0016043
(v1.0)
Pdxdc194184
Minor ZGA0.95865
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016516
(v2.0)
Pdxdc194184
615/3440.3245447/3440.261207/3442.8252412/3441.584521/344-1.926498/344-2.393
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016516
(v2.0)
Pdxdc194184
335/1640.515190/1640.0955204/1643.82395/1642.58117/164-2.335950/164-2.2788
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016516
(v2.0)
Pdxdc194184
43.240511936.34
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016516
(v2.0)
Pdxdc194184
11.57588613.46
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016043
(v1.0)
Pdxdc1NM_001039533,NM_05318194184
34.504632.821923.243813.646213.4665
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016043
(v1.0)
Pdxdc1NM_001039533,NM_05318194184
1639.331378.151050.25645.64263.6587
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0016043
(v1.0)
Pdxdc1NM_001039533,NM_05318194184
36.077747.040135.8094
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0016043
(v1.0)
Pdxdc1NM_001039533,NM_05318194184
35.215532.492339.3638
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0016043
(v1.0)
Pdxdc1NM_001039533,NM_05318194184
401.495449.245
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0016043
(v1.0)
Pdxdc1NM_001039533,NM_05318194184
36.098746.395843.1729
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0016043
(v1.0)
Pdxdc1NM_001039533,NM_05318194184
21.520113.17613.8861
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0016043
(v1.0)
Pdxdc1NM_001039533,NM_05318194184
159.967112.237
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0016043
(v1.0)
Pdxdc1NM_001039533,NM_05318194184
46.13433.60721
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0016043
(v1.0)
Pdxdc1NM_001039533,NM_05318194184
7.313381.7343
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0016043
(v1.0)
12348H3141H01-5AA41581794184
U036808NAP002070-001AA415817;TC858486,TC822315,TC807683,TC794628Q99K01U,F,23.05392.91792.89642.90373.08452.98242.9864
0016043
(v1.0)
16068K0325G05-3Mm.22635AA41581794184
NAP106643-1Kiaa0251-hpTC7946283.89463.85633.97723.89993.96983.9923.9794
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0016043
(v1.0)
1452705_atMm.171484Pdxdc1NM_001039533.1,NM_053181.294184
212.3250204.2073.075
0016043
(v1.0)
1436372_a_atMm.171484Pdxdc1NM_001039533.1,NM_053181.294184
57.150000
0016043
(v1.0)
1419327_atMm.171484Pdxdc1NM_001039533.1,NM_053181.294184
00142.2250231.975
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0016043
(v1.0)
A_51_P238557AA415817NM_05318194184
11P0.7240.195P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0016043
(v1.0)
Pdxdc194184
81229152