DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0016109
GenePfdn1
Synonyms
Desc.prefoldin 1
LocusNM_026027 chr18:36563333-36614149(-)
DB links


Entrez 67199
MGI 1914449
Ensembl ENSMUSG00000024346
Featureprotein-coding
GO(BP)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2016585
(v2.0)
Pfdn1NM_02602767199
46.309671.861655.56396.6794519.9222168.95639.3496124.46722.4832192.132
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0016109
(v1.0)
Pfdn167199
Maternal RNA0.97552
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016585
(v2.0)
Pfdn167199
550/434-0.1707458/434-0.038548/4340.4144126/434-0.4499109/4340.0638653/434-0.0099
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016585
(v2.0)
Pfdn167199
261/206-0.1705173/206-0.36644/2061.3238111/2060.434638/206-0.3722205/206-0.6027
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016585
(v2.0)
Pfdn167199
71.370410468.63
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016585
(v2.0)
Pfdn167199
23.91465444.29
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016109
(v1.0)
Pfdn1NM_02602767199
74.69738.51454.9745313.835128.287
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016109
(v1.0)
Pfdn1NM_02602767199
161.93379.461413.19933.163440.2653
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0016109
(v1.0)
Pfdn1NM_02602767199
78.102616.935942.0201
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0016109
(v1.0)
Pfdn1NM_02602767199
76.235838.127892.324
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0016109
(v1.0)
Pfdn1NM_02602767199
43.8884106.963
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0016109
(v1.0)
Pfdn1NM_02602767199
78.147916.7039101.258
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0016109
(v1.0)
Pfdn1NM_02602767199
4.6056413.358315.6538
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0016109
(v1.0)
Pfdn1NM_02602767199
16.691420.6125
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0016109
(v1.0)
Pfdn1NM_02602767199
11.03330.344985
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0016109
(v1.0)
Pfdn1NM_02602767199
14.604720.6303
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0016109
(v1.0)
13037H3157C01-3Mm.301842700086I23Rik67199
U038334NAP003883-0012700086I23Rik;TC848158,TC848156,TC848155,TC848154Q9CWM43.11293.06482.80422.74193.20363.523.6744
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0016109
(v1.0)
1417026_atMm.30184Pfdn1NM_026027.367199
440.275714.725100.875182.95282.1
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0016109
(v1.0)
A_52_P456059Pfdn1NM_02602767199
11P0.7560.218P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0016109
(v1.0)
Pfdn167199
101101