DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0016111
GenePfdn4
SynonymsC-1
C1
PFD4
Desc.prefoldin 4
LocusNM_001013369 chr2:170321928-170344570(+)
NM_001110152 chr2:170336730-170344570(+)
NM_001199902 chr2:170336730-170344570(+)
DB links


Entrez 109054
MGI 1923512
Ensembl ENSMUSG00000052033
Vega OTTMUSG00000016125
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2016587
(v2.0)
Pfdn4NM_001013369,NM_001110152,NM_001199902109054
5.0159228.402217.35719.337231.876219.252710.5814133.2425.382225.1645
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0016111
(v1.0)
Pfdn4109054
Maternal RNA0.99785
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016587
(v2.0)
Pfdn4109054
824/4340.4113571/4340.27957/4340.65771346/4342.9569770/4342.8733292/4342.3212
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016587
(v2.0)
Pfdn4109054
455/1710.8952298/1710.681946/1711.6389999/1713.8581492/1713.55071800/1712.7894
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016587
(v2.0)
Pfdn4109054
61.679518732.98
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016587
(v2.0)
Pfdn4109054
12.50861279.85
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016111
(v1.0)
Pfdn4NM_001013369,NM_001110152,NM_001199902109054
237.623150.16414.434322.0417.48604
SOLiD_NMNR_Oo-4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0016111
(v1.0)
Pfdn4NM_001013369,NM_001110152,NM_001199902109054
248.4571.83437163.832
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0016111
(v1.0)
Pfdn4NM_001013369,NM_001110152,NM_001199902109054
242.518148.65698.5951
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0016111
(v1.0)
Pfdn4NM_001013369,NM_001110152,NM_001199902109054
185.146125.523
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0016111
(v1.0)
Pfdn4NM_001013369,NM_001110152,NM_001199902109054
248.6011.80924108.136
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0016111
(v1.0)
Pfdn4NM_001013369,NM_001110152,NM_001199902109054
13.36421.281417.7167
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0016111
(v1.0)
Pfdn4NM_001013369,NM_001110152,NM_001199902109054
28.44624.3671
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0016111
(v1.0)
Pfdn4NM_001013369,NM_001110152,NM_001199902109054
481.89734.6412
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0016111
(v1.0)
Pfdn4NM_001013369,NM_001110152,NM_001199902109054
448.86607.525
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0016111
(v1.0)
1454888_atMm.28808Pfdn4NM_001110152.2,NM_001199902.1,NM_001013369.2109054
14047.82512253.651535.751682.652402.125
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0016111
(v1.0)
A_51_P423791Pfdn4NM_001013369109054
11P0.7190.189P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0016111
(v1.0)
Pfdn4109054
11121.54