DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0016139
GenePgk1
SynonymsPgk-1
Desc.phosphoglycerate kinase 1
LocusNM_008828 chrX:103382463-103399038(+)
DB links


Entrez 18655
MGI 97555
Ensembl ENSMUSG00000062070
Vega OTTMUSG00000018277
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
  •   2 Terms
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2016615
(v2.0)
Pgk1NM_00882818655
272.76614.388522.794131.338714.94141591.87301.718.20115.91732076.75
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0016139
(v1.0)
Pgk118655
Major ZGA0.99664
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016615
(v2.0)
Pgk118655
378/2410.136333/2410.349450/2414.43431480/2413.935829/241-0.9729184/241-0.9828
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016615
(v2.0)
Pgk118655
197/1150.2617165/1150.4016427/1155.35231262/1154.75726/115-2.031745/115-1.9177
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016615
(v2.0)
Pgk118655
52.1629455.49
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016615
(v2.0)
Pgk118655
13.13515324.78
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016139
(v1.0)
Pgk1NM_00882818655
15.176216.05923.661810.537217.43
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016139
(v1.0)
Pgk1NM_00882818655
0.4193290.4426880.7074940.6066678.09682
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0016139
(v1.0)
Pgk1NM_00882818655
15.8681101.25117.5207
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0016139
(v1.0)
Pgk1NM_00882818655
15.488815.897713.6674
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0016139
(v1.0)
Pgk1NM_00882818655
0.4494770.3547
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0016139
(v1.0)
Pgk1NM_00882818655
15.877399.864414.9899
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0016139
(v1.0)
Pgk1NM_00882818655
21.907110.173911.1424
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0016139
(v1.0)
Pgk1NM_00882818655
0.600190.355775
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0016139
(v1.0)
Pgk1NM_00882818655
8.2754816.6773
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0016139
(v1.0)
Pgk1NM_00882818655
17.749117.4713
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0016139
(v1.0)
6345H3023D06-3Pgk118655
U020126NAP028606-1Pgk1;TC891319,TC891318P09411U,F,23.89213.79253.81233.92113.98253.87964.1817
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0016139
(v1.0)
1417864_atMm.336205Pgk1NM_008828.218655
414.225515.3768.0501165.25
0016139
(v1.0)
1438640_x_atMm.336205Pgk1NM_008828.218655
942.751349.22157.3595.852756.075
0016139
(v1.0)
1439435_x_atMm.336205Pgk1NM_008828.218655
106.475135.275243.1750225.35
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0016139
(v1.0)
A_51_P182828Pgk1NM_00882818655
1 (0.936 to 1.13)1P0.7 (0.649 to 0.76)1.50E-06P
0016139
(v1.0)
A_52_P600398Pgk1NM_00882818655
11P0.520.0966P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0016139
(v1.0)
Pgk118655
202721556188