DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0016174
GenePhf13
SynonymsSPOC1
Desc.PHD finger protein 13
LocusNM_172705 chr4:151363740-151370288(-)
DB links


Entrez 230936
MGI 2446217
Ensembl ENSMUSG00000047777
Vega OTTMUSG00000010357
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2016653
(v2.0)
Phf13NM_172705230936
12.4443121.12957.537852.947537.645116.74963.7616575.129233.673511.2237
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0016174
(v1.0)
Phf13230936
Maternal RNA0.9781
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016653
(v2.0)
Phf13230936
1038/4240.7774593/4240.367184/4242.3638442/4241.38620/424-2.2919334/424-0.9404
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016653
(v2.0)
Phf13230936
683/1561.6113366/1561.1091170/1563.6254416/1562.726710/156-1.8062196/156-0.2682
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016653
(v2.0)
Phf13230936
95.998424339.51
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016653
(v2.0)
Phf13230936
14.78781569.48
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016174
(v1.0)
Phf13NM_172705230936
126.0139.923439.40526.00342.59304
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016174
(v1.0)
Phf13NM_172705230936
206.6765.470758.893338.34823.75059
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0016174
(v1.0)
Phf13NM_172705230936
131.7554.5509943.5573
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0016174
(v1.0)
Phf13NM_172705230936
128.60639.522655.6129
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0016174
(v1.0)
Phf13NM_172705230936
48.47763.3422
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0016174
(v1.0)
Phf13NM_172705230936
131.8324.4886660.9943
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0016174
(v1.0)
Phf13NM_172705230936
36.482925.107323.4348
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0016174
(v1.0)
Phf13NM_172705230936
29.559827.8
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0016174
(v1.0)
Phf13NM_172705230936
129.63712.555
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0016174
(v1.0)
Phf13NM_172705230936
257.279192.023
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0016174
(v1.0)
14516J0547A03-3Mm.25582LOC230936230936
LOC230936TC9156044.22074.14363.45063.77593.69083.60863.578
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0016174
(v1.0)
1455175_atMm.25582Phf13NM_172705.2230936
825.71741.35457.05464.575204.475
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0016174
(v1.0)
A_51_P446012Phf13NM_172705230936
11P0.8850.434P
0016174
(v1.0)
A_52_P632397Phf13NM_172705230936
11P1.1870.336P
Proteome N/A