DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0016181
GenePhf20
Synonyms
Desc.PHD finger protein 20
LocusNM_172674 chr2:156022383-156135689(+)
DB links


Entrez 228829
MGI 2444148
Ensembl ENSMUSG00000038116
Vega OTTMUSG00000016135
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2016657
(v2.0)
Phf20NM_172674228829
10.748680.428499.666146.018319.162116.92418.1223788.369222.999812.6856
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0016181
(v1.0)
Phf20228829
Maternal RNA0.89197
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016657
(v2.0)
Phf20228829
584/3710.1414427/3710.0864211/3712.7473612/3712.04612/371-2.7931112/371-2.3118
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016657
(v2.0)
Phf20228829
307/1490.5271212/1490.3903202/1493.9343556/1493.20953/149-3.201155/149-2.0076
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016657
(v2.0)
Phf20228829
49.257110746.03
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016657
(v2.0)
Phf20228829
8.57266313.61
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016181
(v1.0)
Phf20NM_172674228829
83.587469.118134.243313.27695.70418
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016181
(v1.0)
Phf20FR017817,FR041831,NM_172674228829
301.179202.42185.251545.092722.9686
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0016181
(v1.0)
Phf20NM_172674228829
87.39833.9308875.4093
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0016181
(v1.0)
Phf20NM_172674228829
85.309468.424165.4916
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0016181
(v1.0)
Phf20FR017817,FR041831,NM_172674228829
186.346179.565
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0016181
(v1.0)
Phf20NM_172674228829
87.44913.8770471.8289
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0016181
(v1.0)
Phf20NM_172674228829
31.70412.819415.9128
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0016181
(v1.0)
Phf20FR017817,FR041831,NM_172674228829
32.858244.8891
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0016181
(v1.0)
Phf20NM_172674228829
48.717222.509
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0016181
(v1.0)
Phf20NM_172674228829
58.213667.9853
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0016181
(v1.0)
6178H3020A04-3Mm.188986820402O20228829
U002717NAP100887-001TC892363Q921N1U,F,23.5713.65793.09582.82642.54862.62422.7239
0016181
(v1.0)
10795H3103F10-3Mm.188986820402O20228829
U002717NAP100887-001TC892363Q921N1U,F,23.67953.55122.8952.84242.41042.56932.6014
0016181
(v1.0)
15602K0211F07-3Mm.188986820402O20228829
U002717NAP100887-001TC892363Q921N1U,F,23.28613.34243.04432.97632.91772.90932.8941
0016181
(v1.0)
16466K0421A04-3Mm.188986820402O20228829
U002717NAP100887-001TC892363Q921N1U,F,23.71333.65043.15343.24262.76442.94983.0052
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0016181
(v1.0)
1426961_atMm.427078Phf20NM_172674.2228829
557.725492.9508.850134.825
Agilent44K N/A
Proteome N/A