DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0016186
GenePhf3
SynonymsAU020177
Desc.PHD finger protein 3
LocusNM_001081080 chr1:30859187-30920101(-)
DB links


Entrez 213109
MGI 2446126
Ensembl ENSMUSG00000048874
Featureprotein-coding
GO(BP)
GO(MF)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2016662
(v2.0)
Phf3NM_001081080213109
7.9835396.3468108.36489.239569.869315.522813.388990.048472.646115.7984
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0016186
(v1.0)
Phf3213109
Maternal RNA0.99602
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016662
(v2.0)
Phf3213109
343/251-0.062319/2510.22884/251-2.116717/251-2.484711/251-2.352562/251-2.5876
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016662
(v2.0)
Phf3213109
144/104-0.0429148/1040.38953/104-1.258612/104-1.70325/104-2.114324/104-2.6403
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016662
(v2.0)
Phf3213109
51.54315593.71
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016662
(v2.0)
Phf3213109
19.49112097.46
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016186
(v1.0)
Phf3NM_001081080213109
100.12174.877666.395948.4219.35401
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016186
(v1.0)
Phf3NM_001081080213109
138.06176.191569.245354.288714.5226
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0016186
(v1.0)
Phf3NM_001081080213109
104.6852.9196681.6931
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0016186
(v1.0)
Phf3NM_001081080213109
102.18374.125866.6647
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0016186
(v1.0)
Phf3NM_001081080213109
97.697383.5988
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0016186
(v1.0)
Phf3NM_001081080213109
104.7462.8796773.1156
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0016186
(v1.0)
Phf3NM_001081080213109
61.472246.752450.2577
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0016186
(v1.0)
Phf3NM_001081080213109
53.702756.8076
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0016186
(v1.0)
Phf3NM_001081080213109
263.10487.5724
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0016186
(v1.0)
Phf3NM_001081080213109
24.23129.8945
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0016186
(v1.0)
8930H3074D02-3Mm.200840LOC213109213109
U021198NAP107833-1TC821442Q9CV03U,F,23.98743.68883.35133.73743.58993.59893.3675
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0016186
(v1.0)
1438070_atMm.194486Phf3NM_001081080.1213109
69.65134.675101.17500
0016186
(v1.0)
1452441_atMm.194486Phf3NM_001081080.1213109
0198.875125.92500
0016186
(v1.0)
1428998_atMm.194486Phf3NM_001081080.1213109
5249.6550584321.62533.7252152
0016186
(v1.0)
1420119_s_atMm.194486Phf3NM_001081080.1213109
744.851139.725806.6751782.175493.05
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0016186
(v1.0)
A_51_P162307Phf3XM_129836213109
11P1.0120.927P
0016186
(v1.0)
A_51_P173071Phf3XM_129836213109
11P0.9340.618P
0016186
(v1.0)
A_52_P5317Phf3XM_129836213109
11P0.5130.122P
0016186
(v1.0)
A_52_P587648Phf3XM_129836213109
11P0.7520.214P
Proteome N/A