DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0016190
GenePhf8
Synonyms
Desc.PHD finger protein 8
LocusNM_177201 chrX:147955215-148060376(+)
NM_001113354 chrX:147955215-148068400(+)
DB links


Entrez 320595
MGI 2444341
Ensembl ENSMUSG00000041229
Vega OTTMUSG00000017224
Featureprotein-coding
GO(BP)
  •   9 Terms
      G1/S transition of mitotic cell cycle (GO:0000082)
      histone H3-K9 demethylation (GO:0033169)
      histone H4-K20 demethylation (GO:0035574)
      positive regulation of transcription, DNA-dependent (GO:0045893)
      positive regulation of transcription from RNA polymerase I promoter (GO:0045943)
      oxidation-reduction process (GO:0055114)
      negative regulation of chromatin silencing at rDNA (GO:0061188)
      histone H3-K36 demethylation (GO:0070544)
      histone H3-K27 demethylation (GO:0071557)
GO(MF)
  •   10 Terms
      chromatin binding (GO:0003682)
      iron ion binding (GO:0005506)
      zinc ion binding (GO:0008270)
      oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (GO:0016706)
      histone demethylase activity (GO:0032452)
      histone demethylase activity (H3-K9 specific) (GO:0032454)
      methylated histone residue binding (GO:0035064)
      histone demethylase activity (H4-K20 specific) (GO:0035575)
      histone demethylase activity (H3-K36 specific) (GO:0051864)
      histone demethylase activity (H3-K27 specific) (GO:0071558)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2016666
(v2.0)
Phf8NM_001113354,NM_177201320595
14.532130.731552.791222.95357.913123.307775.749651.69959.37623.09205
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0016190
(v1.0)
Phf8320595
Minor ZGA0.93529
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016666
(v2.0)
Phf8320595
343/1830.3917239/1830.2676492/1834.93821566/1834.409711/183-1.9054139/183-0.9883
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016666
(v2.0)
Phf8320595
209/950.6194134/950.3765467/955.72821291/955.05912/95-2.98929/95-2.2529
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016666
(v2.0)
Phf8320595
26.645710824.67
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016666
(v2.0)
Phf8320595
10.2529011.39
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016190
(v1.0)
Phf8NM_001113354,NM_177201320595
31.760334.902617.08225.416743.97253
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016190
(v1.0)
Phf8NM_001113354,NM_177201320595
727.195389.816440.33189.449752.9317
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0016190
(v1.0)
Phf8NM_001113354,NM_177201320595
33.20835.3145438.0795
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0016190
(v1.0)
Phf8NM_001113354,NM_177201320595
32.414634.552238.2606
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0016190
(v1.0)
Phf8NM_001113354,NM_177201320595
494.361395.527
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0016190
(v1.0)
Phf8NM_001113354,NM_177201320595
33.22765.2417541.9629
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0016190
(v1.0)
Phf8NM_001113354,NM_177201320595
15.81555.230086.49677
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0016190
(v1.0)
Phf8NM_001113354,NM_177201320595
113.378132.907
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0016190
(v1.0)
Phf8NM_001113354,NM_177201320595
28.32839.46506
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0016190
(v1.0)
Phf8NM_001113354,NM_177201320595
1.241461.26357
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0016190
(v1.0)
1460398_atMm.17156Phf8NM_001113354.1,NM_177201.5320595
231.025257.175100.92583.07560.425
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0016190
(v1.0)
A_51_P258698Phf8AK122447320595
11P0.5540.113P
Proteome N/A