DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0016191
GenePhgdh
Synonyms3-PGDH
3PGDH
A10
PGAD
PGD
PGDH
SERA
Desc.3-phosphoglycerate dehydrogenase
LocusNM_016966 chr3:98117094-98143892(-)
DB links


Entrez 236539
MGI 1355330
Ensembl ENSMUSG00000053398
Vega OTTMUSG00000026317
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2016667
(v2.0)
PhgdhNM_016966236539
23.852412.01316.3759392.6777183.27482.5311118.2996.07359143.15787.5862
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0016191
(v1.0)
Phgdh236539
MGA0.99742
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016667
(v2.0)
Phgdh236539
699/4410.1514418/441-0.19369/4410.9066327/4410.896191/4410.84461019/4410.6078
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016667
(v2.0)
Phgdh236539
341/1760.4392212/1760.151554/1761.8268253/1761.8401132/1761.6199619/1761.2104
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016667
(v2.0)
Phgdh236539
85.183815156.41
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016667
(v2.0)
Phgdh236539
24.86798728.58
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016191
(v1.0)
PhgdhNM_016966236539
12.48954.4454469.0094127.04584.9207
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016191
(v1.0)
PhgdhNM_016966236539
1.10960.3093165.507478.200326.65572
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0016191
(v1.0)
PhgdhNM_016966236539
13.05898.723074.85007
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0016191
(v1.0)
PhgdhNM_016966236539
12.74684.40084.51092
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0016191
(v1.0)
PhgdhNM_016966236539
0.3139650.381267
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0016191
(v1.0)
PhgdhNM_016966236539
13.06658.603594.94742
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0016191
(v1.0)
PhgdhNM_016966236539
63.892122.66798.9708
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0016191
(v1.0)
PhgdhNM_016966236539
8.111755.20248
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0016191
(v1.0)
PhgdhNM_016966236539
0.90236117.5867
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0016191
(v1.0)
PhgdhNM_016966236539
00.0647519
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0016191
(v1.0)
1426657_s_atMm.371997Phgdh236539
54.75046.625345.525197.6
0016191
(v1.0)
1426658_x_atMm.371997Phgdh236539
383.80405.7751344.025653.55
0016191
(v1.0)
1454714_x_atMm.371997Phgdh236539
131.6250181.81476.425540.025
0016191
(v1.0)
1437621_x_atMm.371997Phgdh236539
173.1250157.6751229.25657.95
0016191
(v1.0)
1456471_x_atMm.371997Phgdh236539
145.2750177.025655.225308.6
0016191
(v1.0)
1456584_x_atMm.371997Phgdh236539
197.8750200604.875479.675
0016191
(v1.0)
1432707_atMm.371997Phgdh236539
113.225109.2594.325134.975105.125
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0016191
(v1.0)
A_51_P408729PhgdhNM_016966236539
11P1.5970.134P
0016191
(v1.0)
A_51_P408732PhgdhNM_016966236539
11P1.5650.14P
0016191
(v1.0)
A_52_P661606PhgdhNM_016966236539
11P1.1170.562P
Proteome N/A