DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0016213
GenePhtf1
SynonymsPhft
Desc.putative homeodomain transcription factor 1
LocusNM_001163467 chr3:103772033-103811414(+)
NM_013629 chr3:103772181-103811414(+)
NM_001163469 chr3:103772181-103811414(+)
NM_001163468 chr3:103772181-103811414(+)
DB links


Entrez 18685
MGI 1332671
Ensembl ENSMUSG00000058388
Vega OTTMUSG00000024266
Featureprotein-coding
GO(BP)
  •   2 Terms
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2016689
(v2.0)
Phtf1NM_001163467,NM_001163468,NM_001163469,NM_01362918685
8.754019.6937213.49697.939174.718915.6468810.616112.2064.475146.1589
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0016213
(v1.0)
Phtf118685
Minor ZGA0.94535
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016689
(v2.0)
Phtf118685
670/3410.4604473/3410.3549100/3411.7952260/3410.93515/341-2.3733118/341-2.1162
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016689
(v2.0)
Phtf118685
377/1800.5512232/1800.248796/1802.615240/1801.73233/180-3.467155/180-2.2786
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016689
(v2.0)
Phtf118685
43.158611537.53
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016689
(v2.0)
Phtf118685
15.39528518.11
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016213
(v1.0)
Phtf1NM_001163467,NM_001163468,NM_001163469,NM_01362918685
10.06439.313465.843363.236647.42884
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016213
(v1.0)
Phtf1NM_001163467,NM_001163468,NM_001163469,NM_01362918685
245.873227.51192.8176171.965152.323
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0016213
(v1.0)
Phtf1NM_001163467,NM_001163468,NM_001163469,NM_01362918685
10.52323.2014410.1612
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0016213
(v1.0)
Phtf1NM_001163467,NM_001163468,NM_001163469,NM_01362918685
10.27179.219949.0586
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0016213
(v1.0)
Phtf1NM_001163467,NM_001163468,NM_001163469,NM_01362918685
202.218203.581
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0016213
(v1.0)
Phtf1NM_001163467,NM_001163468,NM_001163469,NM_01362918685
10.52933.157599.93516
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0016213
(v1.0)
Phtf1NM_001163467,NM_001163468,NM_001163469,NM_01362918685
5.410043.125113.13282
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0016213
(v1.0)
Phtf1NM_001163467,NM_001163468,NM_001163469,NM_01362918685
27.32828.55702
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0016213
(v1.0)
Phtf1NM_001163467,NM_001163468,NM_001163469,NM_01362918685
26.93634.30494
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0016213
(v1.0)
Phtf1NM_001163467,NM_001163468,NM_001163469,NM_01362918685
11.07946.27248
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0016213
(v1.0)
9590H3083F09-3Mm.25877Phtf18685
U003675NAP121549-001Phtf;TC854695,TC838120,TC827453Q9QZ09U,F,23.62023.34843.19593.11613.87113.41623.7924
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0016213
(v1.0)
1449148_a_atMm.385178Phtf1NM_013629.2,NM_001163469.1,NM_001163468.1,NM_001163467.118685
97.225201118.1500
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0016213
(v1.0)
A_51_P256623Phtf1NM_01362918685
11P1.0610.658P
0016213
(v1.0)
A_52_P644226Phtf1NM_01362918685
11P0.8580.495P
Proteome N/A