DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0016413
GenePld1
SynonymsPld1a
Pld1b
Desc.phospholipase D1
LocusNM_001164056 chr3:27837602-28032284(+)
NM_008875 chr3:27883093-28032284(+)
DB links


Entrez 18805
MGI 109585
Ensembl ENSMUSG00000027695
Vega OTTMUSG00000028207
Featureprotein-coding
GO(BP)
  •   6 Terms
      phosphatidic acid biosynthetic process (GO:0006654)
      phospholipid biosynthetic process (GO:0008654)
      phospholipid catabolic process (GO:0009395)
      positive regulation of cell migration (GO:0030335)
      response to peptide hormone stimulus (GO:0043434)
      defense response to Gram-positive bacterium (GO:0050830)
GO(MF)
  •   1 Terms
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2016894
(v2.0)
Pld1NM_001164056,NM_00887518805
1.7082102.176191.61645.682611.99150.5341961.542174.17814.69610.546369
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0016413
(v1.0)
Pld118805
Minor ZGA0.9937
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016894
(v2.0)
Pld118805
666/3660.35470/3660.24486/3661.4813427/3661.5472334/3661.91381545/3661.4758
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016894
(v2.0)
Pld118805
417/1720.7614291/1720.639477/1722.3619388/1722.4877281/1722.73661239/1722.2427
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016894
(v2.0)
Pld118805
56.433611349.94
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016894
(v2.0)
Pld118805
24.35767831.23
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016413
(v1.0)
Pld1NM_001164056,NM_00887518805
106.215131.80333.97248.305051.05746
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016413
(v1.0)
Pld1NM_001164056,NM_00887518805
507.474418.076233.14152.52441.69794
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0016413
(v1.0)
Pld1NM_001164056,NM_00887518805
111.0580.62471143.8
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0016413
(v1.0)
Pld1NM_001164056,NM_00887518805
108.403130.48128.815
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0016413
(v1.0)
Pld1NM_001164056,NM_00887518805
433.039356.164
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0016413
(v1.0)
Pld1NM_001164056,NM_00887518805
111.1220.616153141.28
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0016413
(v1.0)
Pld1NM_001164056,NM_00887518805
31.45328.0188610.1909
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0016413
(v1.0)
Pld1NM_001164056,NM_00887518805
40.673724.0045
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0016413
(v1.0)
Pld1NM_001164056,NM_00887518805
177.25980.5944
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0016413
(v1.0)
Pld1NM_001164056,NM_00887518805
118.612137.319
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0016413
(v1.0)
1124C0179G02-3Mm.7819Pld118805
U003097NAP097781-001Pld1;TC826814Q9Z280U,F,23.72263.67132.61362.43432.68982.50952.5587
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0016413
(v1.0)
1425739_atMm.212039Pld1NM_001164056.1,NM_008875.418805
94.125178.675179.100
0016413
(v1.0)
1437112_atMm.212039Pld1NM_001164056.1,NM_008875.418805
355.15604.45411.100
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0016413
(v1.0)
A_52_P578359Pld1NM_00887518805
11P0.8270.308P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0016413
(v1.0)
Pld118805
23.753510.55.25