DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0016513
GenePnkd
SynonymsBrp17
Desc.paroxysmal nonkinesiogenic dyskinesia
LocusNM_025580 chr1:74331608-74334027(+)
NM_001039509 chr1:74331608-74400266(+)
NM_019999 chr1:74379184-74400266(+)
DB links


Entrez 56695
MGI 1930773
Ensembl ENSMUSG00000026179
Vega OTTMUSG00000021729
Featureprotein-coding
GO(BP)
  •   1 Terms
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2016999
(v2.0)
PnkdNM_001039509,NM_019999,NM_02558056695
68.328324.419532.98328.9535612.581965.32639.8959142.48829.2501178.974
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0016513
(v1.0)
Pnkd56695
Minor ZGA0.96116
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016999
(v2.0)
Pnkd56695
766/602-0.1649419/602-0.6377763/6023.91611558/6022.698120/602-2.7935188/602-2.2692
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016999
(v2.0)
Pnkd56695
314/242-0.1365166/242-0.6566364/2424.1234694/2422.83849/242-2.563850/242-2.8372
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016999
(v2.0)
Pnkd56695
90.674618449.28
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016999
(v2.0)
Pnkd56695
24.757311321.91
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016513
(v1.0)
PnkdNM_001039509,NM_019999,NM_02558056695
25.414122.95026.708258.755327.24472
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016513
(v1.0)
PnkdNM_001039509,NM_019999,NM_02558056695
79.18920.32234.333416.4438111.2074
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0016513
(v1.0)
PnkdNM_001039509,NM_019999,NM_02558056695
26.572824.988525.0392
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0016513
(v1.0)
PnkdNM_001039509,NM_019999,NM_02558056695
25.937722.719831.4626
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0016513
(v1.0)
PnkdNM_001039509,NM_019999,NM_02558056695
9.6275428.801
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0016513
(v1.0)
PnkdNM_001039509,NM_019999,NM_02558056695
26.588324.646234.5071
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0016513
(v1.0)
PnkdNM_001039509,NM_019999,NM_02558056695
6.210798.453616.52302
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0016513
(v1.0)
PnkdNM_001039509,NM_019999,NM_02558056695
2.507582.80752
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0016513
(v1.0)
PnkdNM_001039509,NM_019999,NM_02558056695
7.062911.87612
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0016513
(v1.0)
PnkdNM_001039509,NM_019999,NM_02558056695
103.09962.9017
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0016513
(v1.0)
12771H3152B02-3Mm.177272Brp1756695
U000447NAP006071-001Brp17;TC837856,TC837851Q9JJA34.23134.52214.97734.84.37114.7124.4909
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0016513
(v1.0)
1451399_atMm.384726PnkdNM_001039509.1,NM_019999.2,NM_025580.256695
188.075293.125145.30246.75
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0016513
(v1.0)
A_51_P177622MGI:1930773NM_02558056695
11P1.310.225P
0016513
(v1.0)
A_51_P372141MGI:1930773NM_01999956695
11P1.1840.391P
0016513
(v1.0)
A_52_P482830MGI:1930773NM_02558056695
11P1.2410.276P
Proteome N/A