DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0016579
GenePolr1c
Synonyms40kDa
RPA40
Rpo1-1
Desc.polymerase (RNA) I polypeptide C
LocusNM_009085 chr17:46380869-46384994(-)
DB links


Entrez 20016
MGI 103288
Ensembl ENSMUSG00000067148
Vega OTTMUSG00000028872
Featureprotein-coding
GO(BP)
  •   1 Terms
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2017065
(v2.0)
Polr1cNM_00908520016
31.30365.141527.66098192.884194.579181.69254.92265.41942186.538205.392
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0016579
(v1.0)
Polr1c20016
Major ZGA0.99489
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017065
(v2.0)
Polr1c20016
874/5980.0346449/598-0.5286254/5982.3424665/5981.480612/598-3.4758118/598-2.9247
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017065
(v2.0)
Polr1c20016
421/2160.4482198/216-0.2405229/2163.6128576/2162.73219/216-2.402746/216-2.7906
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017065
(v2.0)
Polr1c20016
95.534619150.02
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017065
(v2.0)
Polr1c20016
31.36511527.27
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016579
(v1.0)
Polr1cNM_00908520016
5.343915.32882143.6135.06139.2639
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016579
(v1.0)
Polr1cNM_00908520016
13.881911.1525399.07440.7111.861
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0016579
(v1.0)
Polr1cNM_00908520016
5.5875511.4485.81385
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0016579
(v1.0)
Polr1cNM_00908520016
5.4545.275314.01481
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0016579
(v1.0)
Polr1cNM_00908520016
13.36611.5133
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0016579
(v1.0)
Polr1cNM_00908520016
5.5907911.29124.40331
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0016579
(v1.0)
Polr1cNM_00908520016
132.951130.407129.041
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0016579
(v1.0)
Polr1cNM_00908520016
156.649152.499
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0016579
(v1.0)
Polr1cNM_00908520016
12.6348152.703
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0016579
(v1.0)
Polr1cNM_00908520016
8.736041.12689
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0016579
(v1.0)
7519H3049D09-3Mm.3458Rpo1-120016
U037850NAP092745-001Rpo1-1;TC892786P52432U,F,22.46962.69823.39583.59172.59453.04812.5329
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0016579
(v1.0)
1417041_atMm.3458Polr1cNM_009085.220016
75.7250767.475918.725424.1
0016579
(v1.0)
1449648_s_atMm.3458Polr1cNM_009085.220016
63.2540.3251620.9252340.35776.475
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0016579
(v1.0)
A_51_P112557Rpo1-1NM_00908520016
11P0.5140.11P
Proteome N/A