DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0016580
GenePolr1d
Synonyms16kDa
mRPA16
Rpo1-3
Desc.polymerase (RNA) I polypeptide D
LocusNM_009087 chr5:147889117-147890656(+)
NM_181730 chr5:147889144-147922935(+)
DB links


Entrez 20018
MGI 108403
Ensembl ENSMUSG00000029642
Vega OTTMUSG00000024630
Featureprotein-coding
GO(BP)
  •   1 Terms
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2017066
(v2.0)
Polr1dNM_009087,NM_18173020018
104.491151.4999.3481303.756422.431211.283139.85992.3901395.046257.055
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0016580
(v1.0)
Polr1d20018
2-Cell Transient0.94162
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017066
(v2.0)
Polr1d20018
810/4510.3313476/451-0.0383327/4513.1033693/4511.94519/451-3.4505120/451-2.4945
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017066
(v2.0)
Polr1d20018
456/1840.7932231/1840.2109311/1844.2708659/1843.15446/184-2.690760/184-2.1879
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017066
(v2.0)
Polr1d20018
74.878222233.73
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017066
(v2.0)
Polr1d20018
19.156715812.12
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016580
(v1.0)
Polr1dNM_009087,NM_18173020018
212.95993.1014315.54408.157137.302
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016580
(v1.0)
Polr1dFR509807,NM_009087,NM_18173020018
97.068435.0357170.394227.95464.6005
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0016580
(v1.0)
Polr1dNM_009087,NM_18173020018
222.66851.7199101.576
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0016580
(v1.0)
Polr1dNM_009087,NM_18173020018
217.34692.166691.0656
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0016580
(v1.0)
Polr1dNM_009087,NM_18173020018
38.384232.8836
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0016580
(v1.0)
Polr1dNM_009087,NM_18173020018
222.79751.011599.8777
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0016580
(v1.0)
Polr1dNM_009087,NM_18173020018
292.141394.092382.967
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0016580
(v1.0)
Polr1dNM_009087,NM_18173020018
421.467401.899
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0016580
(v1.0)
Polr1dNM_009087,NM_18173020018
48.3436149.39
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0016580
(v1.0)
Polr1dNM_009087,NM_18173020018
34.154123.7923
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0016580
(v1.0)
6264H3022B05-3Rpo1-320018
U006442NAP099553-001TC799282P97304U,F,23.83294.12484.5794.36164.014.19923.902
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0016580
(v1.0)
1448287_atMm.317557Polr1dNM_181730.3,NM_009087.120018
985.6456.11415.1751653.6968.15
0016580
(v1.0)
1451120_atMm.361617~Mm.317557Gm12751~Polr1d~NM_181730.3,NM_009087.1100039220
20018
525.7250119.150284.925
0016580
(v1.0)
1459657_s_atMm.361617~Mm.317557Gm12751~Polr1d~NM_181730.3,NM_009087.1100039220
20018
3600.3251084.05784.8751549.1252483.325
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0016580
(v1.0)
A_51_P260513Rpo1-3NM_00908720018
11P0.4890.0884P
Proteome N/A