DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0016672
GenePpfibp1
Synonyms
Desc.PTPRF interacting protein, binding protein 1 (liprin beta 1)
LocusNM_001170433 chr6:146837016-146980545(+)
NM_026221 chr6:146837016-146980545(+)
DB links


Entrez 67533
MGI 1914783
Ensembl ENSMUSG00000016487
Vega OTTMUSG00000022991
Featureprotein-coding
GO(BP)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2017162
(v2.0)
Ppfibp1NM_001170433,NM_02622167533
7.954289.8475521.764221.2929.115719.0385932.96717.633411.27718.97976
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0016672
(v1.0)
Ppfibp167533
Minor ZGA0.97874
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017162
(v2.0)
Ppfibp167533
706/4220.2291466/4220.026890/4221.3469219/4220.38396/422-0.0776612/422-0.0629
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017162
(v2.0)
Ppfibp167533
354/1700.5427208/1700.173982/1702.4672184/1701.432142/1700.0398221/170-0.2194
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017162
(v2.0)
Ppfibp167533
63.0212749.62
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017162
(v2.0)
Ppfibp167533
21.06758225.69
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016672
(v1.0)
Ppfibp1NM_001170433,NM_02622167533
10.235215.092915.85366.32423.1786
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016672
(v1.0)
Ppfibp1FR080621,NM_001170433,NM_02622167533
157.033283.402294.05137.887358.727
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0016672
(v1.0)
Ppfibp1NM_001170433,NM_02622167533
10.70192.9089716.4667
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0016672
(v1.0)
Ppfibp1NM_001170433,NM_02622167533
10.446114.941313.0692
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0016672
(v1.0)
Ppfibp1FR080621,NM_001170433,NM_02622167533
411.445421.202
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0016672
(v1.0)
Ppfibp1NM_001170433,NM_02622167533
10.70812.8691314.3339
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0016672
(v1.0)
Ppfibp1NM_001170433,NM_02622167533
14.6786.106087.78156
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0016672
(v1.0)
Ppfibp1FR080621,NM_001170433,NM_02622167533
231.109333.693
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0016672
(v1.0)
Ppfibp1NM_001170433,NM_02622167533
5.609055.25706
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0016672
(v1.0)
Ppfibp1NM_001170433,NM_02622167533
3.565566.03152
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0016672
(v1.0)
18120L0062H05-3Mm.161335U007583NAP037769-1Ppfibp1;TC872374Q9CUT7U,F2.4142.36612.52432.34562.55072.36772.5032
0016672
(v1.0)
18349L0202C07-3Mm.103382Ppfibp167533
U007583NAP002097-001Ppfibp1;TC847883,TC847882Q9CUT7U,F3.6953.64893.0493.2082.66242.75143.0945
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0016672
(v1.0)
1452759_s_atMm.103382Ppfibp1NM_001170433.1,NM_026221.267533
139.225279.45359.35158.625202.875
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0016672
(v1.0)
A_51_P204860Ppfibp1NM_02622167533
11P0.8320.316P
0016672
(v1.0)
A_51_P204862Ppfibp1NM_02622167533
11P0.680.163P
Proteome N/A