DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:0016693

Gene

Ppm1b

Synonyms

PP2CB

Description

protein phosphatase 1B, magnesium dependent, beta isoform

Locus

NM_001159497 UCSC: chr17:85356081-85423332(+) OLP: chr17:85356081-85423332(+)
NM_011151 UCSC: chr17:85357341-85416468(+) OLP: chr17:85357341-85416468(+)
NM_001159496 UCSC: chr17:85357341-85414116(+) OLP: chr17:85357341-85414116(+)
NM_001159498 UCSC: chr17:85373392-85423332(+) OLP: chr17:85373392-85423332(+)

DB links

Entrez 19043
MGI 101841
Ensembl ENSMUSG00000061130

Feature

protein-coding

GO_BP

2 Terms

GO_MF

7 Terms

GO_CC

KEGG

1 Terms

see DBTMEE:2017183 (v2.0)

SPR_Histone_Erkek_5KaroundTSS

N/A

SPR_Histone_Erkek_2KaroundTSS

N/A

SPR_Methy_Kobayashi_5KaroundTSS

N/A

SPR_Methy_Kobayashi_2KaroundTSS

N/A

SOLiD_OocyteTo4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	MEF_FPKM
0016693 (v1.0)	Ppm1b	NM_001159496,NM_001159497,NM_001159498,NM_011151	19043	121.856	125.721	111.125	64.3617	16.7712

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	1C_FPKM
0016693 (v1.0)	Ppm1b	NM_001159496,NM_001159497,NM_001159498,NM_011151	19043	127.412	20.7318	137.165

SOLiD_Partheno1C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	1C_FPKM	p1C_FPKM
0016693 (v1.0)	Ppm1b	NM_001159496,NM_001159497,NM_001159498,NM_011151	19043	124.366	124.459	127.179

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	p1C_FPKM
0016693 (v1.0)	Ppm1b	NM_001159496,NM_001159497,NM_001159498,NM_011151	19043	127.486	20.4479	139.485

SOLiD_Partheno4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	2C_FPKM	4C_FPKM	p4C_FPKM
0016693 (v1.0)	Ppm1b	NM_001159496,NM_001159497,NM_001159498,NM_011151	19043	102.884	62.1438	71.6333

Illumina_Oo_2C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	2C_FPKM
0016693 (v1.0)	Ppm1b	NM_001159496,NM_001159497,NM_001159498,NM_011151	19043	220.236	66.4619

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_1_1	Oo_2_1
0016693 (v1.0)	Ppm1b	NM_001159496,NM_001159497,NM_001159498,NM_011151	19043	82.7459	96.1432

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0016693 (v1.0)	6314	H3022H06-3		Ppm1b	19043	U018292	NAP119160-1	Ppm1b;ppm1b1;	TC832854	P36993	U,F,2	3.8123	3.6835	3.3147	3.4637	2.7015	3.3002	3.1955
0016693 (v1.0)	19943	L0510B11-3	Mm.849	Ppm1b	19043	U018292	NAP001609-002	Ppm1b;ppm1b1;	TC887440	P36993	U,F,2	3.9113	3.7372	3.0209	3.1412	2.6896	2.9334	3.0482

DBTMEE	Probe_ID	Unigene	Gene	RefSeq	Entrez	Oo	1C	2C	8C	Blastocyst
0016693 (v1.0)	1425330_a_at	Mm.249695	Ppm1b	NM_011151.2,NM_001159496.1,NM_001159497.1,NM_001159498.1	19043	592.725	1944.72	527.9	0	94
0016693 (v1.0)	1451669_at	Mm.249695	Ppm1b	NM_011151.2,NM_001159496.1,NM_001159497.1,NM_001159498.1	19043	1049.8	2223.68	1452.47	1334.32	1753.18
0016693 (v1.0)	1426382_at	Mm.249695	Ppm1b	NM_011151.2,NM_001159496.1,NM_001159497.1,NM_001159498.1	19043	961.225	1727.3	897.875	214.8	567.85

DBTMEE	Probe_ID	Gene	Acc	Entrez	Oo1_xFold	Oo1_pVal	Oo1_Flag	Oo2_xFold	Oo2_pVal	Oo2_Flag
0016693 (v1.0)	A_51_P140541	Ppm1b	BC090963	19043	1	1	P	1.026	0.839	P
0016693 (v1.0)	A_52_P34043	Ppm1b	NM_011151	19043	1	1	P	1.36	0.2	P
0016693 (v1.0)	A_52_P402175	Ppm1b	NM_011151	19043	1	1	P	0.792	0.258	P

DBTMEE	Gene	Entrez	GV_seqCount	MII_seqCount	Zygote_seqCount	GV_specCount	MII_specCount	Zygote_specCount
0016693 (v1.0)	Ppm1b	19043	2	2	0.17	2	6	0.17