DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0016822
GenePrdm4
SynonymsSC-1
Desc.PR domain containing 4
LocusNM_181650 chr10:85354713-85379690(-)
DB links


Entrez 72843
MGI 1920093
Ensembl ENSMUSG00000035529
Featureprotein-coding
GO(BP)
  •   3 Terms
GO(MF)
GO(CC)
KEGG
  •   1 Terms
      Neurotrophin signaling pathway (mmu04722)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2017315
(v2.0)
Prdm4NM_18165072843
7.541336.033823.358282.352943.29748.7105211.518520.372240.95319.67428
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0016822
(v1.0)
Prdm472843
2-Cell Transient0.97407
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017315
(v2.0)
Prdm472843
737/4210.2944518/4210.1825103/4211.5428346/4211.0438117/4210.2086771/4210.273
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017315
(v2.0)
Prdm472843
390/1620.7511232/1620.399891/1622.6806284/1622.12433/162-0.2312204/162-0.265
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017315
(v2.0)
Prdm472843
46.009811739.32
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017315
(v2.0)
Prdm472843
9.6257812.34
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016822
(v1.0)
Prdm4NM_18165072843
37.457516.162661.335130.03188.18569
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016822
(v1.0)
Prdm4NM_18165072843
47.237626.273677.092644.589910.6231
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0016822
(v1.0)
Prdm4NM_18165072843
39.16532.7579317.6338
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0016822
(v1.0)
Prdm4NM_18165072843
38.229216.000315.0537
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0016822
(v1.0)
Prdm4NM_18165072843
24.103420.4195
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0016822
(v1.0)
Prdm4NM_18165072843
39.1882.7201616.5104
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0016822
(v1.0)
Prdm4NM_18165072843
56.786728.996928.3391
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0016822
(v1.0)
Prdm4NM_18165072843
36.674633.3004
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0016822
(v1.0)
Prdm4NM_18165072843
11.70927.2235
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0016822
(v1.0)
Prdm4NM_18165072843
24.114517.4427
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0016822
(v1.0)
11998H3130G08-52810470D21Rik72843
U032085NAP091715-12810470D21Rik;TC899532,TC876525U,F,23.75873.71433.9633.82563.90743.87433.8648
0016822
(v1.0)
18505L0210F03-3Mm.253072810470D21Rik72843
U032085NAP094529-0012810470D21Rik;TC899532,TC876525U,F,24.324.22343.83554.27363.62273.65523.593
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0016822
(v1.0)
1452208_atMm.25307Prdm4NM_181650.272843
197.05385.95433.2161.5598.05
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0016822
(v1.0)
A_52_P289893Prdm4NM_18165072843
11P0.8140.349P
Proteome N/A