DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0016878
GenePrkd1
SynonymsPkcm
PKD1
Prkcm
Desc.protein kinase D1
LocusNM_008858 chr12:51442219-51750210(-)
DB links


Entrez 18760
MGI 99879
Ensembl ENSMUSG00000002688
Featureprotein-coding
GO(BP)
  •   29 Terms
      angiogenesis (GO:0001525)
      positive regulation of endothelial cell proliferation (GO:0001938)
      protein phosphorylation (GO:0006468)
      apoptotic process (GO:0006915)
      inflammatory response (GO:0006954)
      Golgi organization (GO:0007030)
      intracellular protein kinase cascade (GO:0007243)
      nervous system development (GO:0007399)
      positive regulation of endothelial cell migration (GO:0010595)
      regulation of keratinocyte proliferation (GO:0010837)
      positive regulation of neuron projection development (GO:0010976)
      phosphorylation (GO:0016310)
      peptidyl-serine phosphorylation (GO:0018105)
      cell differentiation (GO:0030154)
      positive regulation of CREB transcription factor activity (GO:0032793)
      cellular response to oxidative stress (GO:0034599)
      intracellular signal transduction (GO:0035556)
      cellular response to vascular endothelial growth factor stimulus (GO:0035924)
      positive regulation of I-kappaB kinase/NF-kappaB cascade (GO:0043123)
      positive regulation of blood vessel endothelial cell migration (GO:0043536)
      innate immune response (GO:0045087)
      positive regulation of osteoblast differentiation (GO:0045669)
      positive regulation of angiogenesis (GO:0045766)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
      vascular endothelial growth factor receptor signaling pathway (GO:0048010)
      Golgi vesicle transport (GO:0048193)
      positive regulation of NF-kappaB transcription factor activity (GO:0051092)
      negative regulation of cell death (GO:0060548)
      positive regulation of endothelial cell chemotaxis (GO:2001028)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2017373
(v2.0)
Prkd1NM_00885818760
2.4555143.889652.913217.65474.405120.6845573.1324843.68654.919960.935846
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0016878
(v1.0)
Prkd118760
Maternal RNA0.92421
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017373
(v2.0)
Prkd118760
729/4380.2217513/4380.111618/438-0.9652300/4380.7819179/4380.7612945/4380.5091
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017373
(v2.0)
Prkd118760
391/2090.3892239/2090.076915/209-0.1877236/2091.4954128/2091.3332751/2091.242
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017373
(v2.0)
Prkd118760
44.137811538.38
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017373
(v2.0)
Prkd118760
11.62188014.53
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016878
(v1.0)
Prkd1NM_00885818760
45.629536.651713.13243.053982.14812
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016878
(v1.0)
Prkd1NM_00885818760
590.039429.592174.33646.62817.5288
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0016878
(v1.0)
Prkd1NM_00885818760
47.70980.89800539.9878
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0016878
(v1.0)
Prkd1NM_00885818760
46.569536.283732.3632
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0016878
(v1.0)
Prkd1NM_00885818760
469.922497.299
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0016878
(v1.0)
Prkd1NM_00885818760
47.73760.88570535.4949
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0016878
(v1.0)
Prkd1NM_00885818760
12.15852.948743.44051
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0016878
(v1.0)
Prkd1NM_00885818760
35.533929.2701
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0016878
(v1.0)
Prkd1NM_00885818760
41.57699.40092
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0016878
(v1.0)
Prkd1NM_00885818760
16.636913.7377
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0016878
(v1.0)
15693K0226E02-3Mm.990Prkcm18760
U033930NAP104817-1Prkcm;TC870722Q62101U3.84143.93063.29633.07692.82122.93382.7293
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0016878
(v1.0)
1422673_atMm.133719Prkd1NM_008858.318760
686.675815.4529.47500
0016878
(v1.0)
1447623_s_atMm.133719Prkd1NM_008858.318760
3185.43986.21569.700
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0016878
(v1.0)
A_51_P363338PrkcmNM_00885818760
11P0.8770.418P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0016878
(v1.0)
Prkd118760
020020