DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0016955
GenePrpf19
SynonymsD19Wsu55e
Prp19
PSO4
Snev
Desc.PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae)
LocusNM_134129 chr19:10969721-10984049(+)
NM_001253843 chr19:10969721-10984049(+)
NM_001253844 chr19:10973135-10984049(+)
DB links


Entrez 28000
MGI 106247
Ensembl ENSMUSG00000024735
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2017451
(v2.0)
Prpf19NM_001253843,NM_001253844,NM_13412928000
14.076915.455127.231621.143523.952933.809729.193532.273623.289340.0405
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0016955
(v1.0)
Prpf1928000
Minor ZGA0.9899
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017451
(v2.0)
Prpf1928000
730/531-0.0535391/531-0.556562/5310.4932215/5310.026863/531-1.006466/531-0.7858
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017451
(v2.0)
Prpf1928000
316/227-0.0354159/227-0.626453/2271.4543169/2270.898213/227-1.987694/227-1.8546
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017451
(v2.0)
Prpf1928000
88.696716155.09
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017451
(v2.0)
Prpf1928000
29.34729929.64
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016955
(v1.0)
Prpf19NM_13412928000
50.764459.246348.496552.380664.9356
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016955
(v1.0)
Prpf19NM_13412928000
259.243273.631356.158488.197593.761
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0016955
(v1.0)
Prpf19NM_13412928000
53.078916.214264.6391
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0016955
(v1.0)
Prpf19NM_13412928000
51.810258.651574.5446
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0016955
(v1.0)
Prpf19NM_13412928000
1181.21347.52
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0016955
(v1.0)
Prpf19NM_13412928000
53.109715.992181.7581
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0016955
(v1.0)
Prpf19NM_13412928000
44.900250.575650.6922
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0016955
(v1.0)
Prpf19NM_13412928000
650.283584.939
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0016955
(v1.0)
Prpf19NM_13412928000
22.8146.13274
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0016955
(v1.0)
Prpf19NM_13412928000
11.424315.6612
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0016955
(v1.0)
460C0109H11-3Mm.29835D19Wsu55e28000
U019168NAP005302-001AA617263;TC868641,TC859116Q99KP6U,F,22.48122.73012.62362.60972.45672.57282.4824
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0016955
(v1.0)
1449635_atMm.485402Prpf19NM_134129.328000
325.275480.875309.6562.575855.325
0016955
(v1.0)
1456531_x_atMm.485402Prpf19NM_134129.328000
3760.9254427.5753167.92510619.7513001.425
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0016955
(v1.0)
A_51_P113784Prp19NM_13412928000
11P0.0270.0177P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0016955
(v1.0)
Prpf1928000
0.67100.6710