DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0016958
GenePrpf38a
Synonyms
Desc.PRP38 pre-mRNA processing factor 38 (yeast) domain containing A
LocusNM_172697 chr4:108237472-108251941(-)
DB links


Entrez 230596
MGI 1916962
Ensembl ENSMUSG00000063800
Vega OTTMUSG00000008232
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2017454
(v2.0)
Prpf38aNM_172697230596
15.153174.497878.149486.619168.083125.927217.223972.777568.18834.1378
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0016958
(v1.0)
Prpf38a230596
Major ZGA0.93741
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017454
(v2.0)
Prpf38a230596
491/3210.1370/3210.088590/3211.7289266/3211.054330/321-1.333253/321-0.9387
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017454
(v2.0)
Prpf38a230596
236/181-0.1293151/181-0.375389/1812.4995238/1811.712420/181-1.0826164/181-0.7363
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017454
(v2.0)
Prpf38a230596
37.364212130.88
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017454
(v2.0)
Prpf38a230596
9.42799210.25
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016958
(v1.0)
Prpf38aNM_172697230596
77.412654.223864.460447.155212.2686
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016958
(v1.0)
Prpf38aNM_172697230596
345.036215.094215.796169.56328.69
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0016958
(v1.0)
Prpf38aNM_172697230596
80.9425.5416359.1594
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0016958
(v1.0)
Prpf38aNM_172697230596
79.007453.679453.9621
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0016958
(v1.0)
Prpf38aNM_172697230596
1277.161036.67
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0016958
(v1.0)
Prpf38aNM_172697230596
80.98915.4657359.1838
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0016958
(v1.0)
Prpf38aNM_172697230596
59.680345.530347.2894
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0016958
(v1.0)
Prpf38aNM_172697230596
104.53669.2567
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0016958
(v1.0)
Prpf38aNM_172697230596
112.62532.9439
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0016958
(v1.0)
Prpf38aNM_172697230596
12.32618.45252
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0016958
(v1.0)
1144C0181A06-3Mm.287972410002M20230596
U025359NAP094571-0012410002M20Rik;TC914504,TC914502U,F,23.79044.02323.95584.22083.75413.93983.7784
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0016958
(v1.0)
1433565_atMm.157534Prpf38aNM_172697.3230596
1088.725652.31562.175532.825571.05
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0016958
(v1.0)
A_51_P462047Prpf38aNM_172697230596
11P0.5470.105P
Proteome N/A