DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0016960
GenePrpf39
SynonymsSrcs1
Desc.PRP39 pre-mRNA processing factor 39 homolog (yeast)
LocusNM_177806 chr12:66137321-66164373(+)
DB links


Entrez 328110
MGI 104602
Ensembl ENSMUSG00000035597
Vega OTTMUSG00000028931
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2017456
(v2.0)
Prpf39NM_177806328110
3.560793.98584.5245811.759233.804846.295111.27023.2452128.959347.0861
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0016960
(v1.0)
Prpf39328110
MGA0.94986
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017456
(v2.0)
Prpf39328110
453/2430.3843395/2430.582799/2432.2498311/2431.67724/243-1.2477141/243-1.3751
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017456
(v2.0)
Prpf39328110
299/1500.4796233/1500.516398/1502.8894292/1502.273220/150-0.8182125/150-0.8546
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017456
(v2.0)
Prpf39328110
31.691310430.47
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017456
(v2.0)
Prpf39328110
17.55358720.18
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016960
(v1.0)
Prpf39NM_177806328110
4.140973.116258.7389123.38217.94759
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016960
(v1.0)
Prpf39NM_177806328110
40.413926.4943109.031235.27969.8834
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0016960
(v1.0)
Prpf39NM_177806328110
4.329771.302223.39989
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0016960
(v1.0)
Prpf39NM_177806328110
4.226283.084962.40001
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0016960
(v1.0)
Prpf39NM_177806328110
9.893757.98313
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0016960
(v1.0)
Prpf39NM_177806328110
4.332281.284382.63225
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0016960
(v1.0)
Prpf39NM_177806328110
8.0908722.576319.971
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0016960
(v1.0)
Prpf39NM_177806328110
158.53151.834
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0016960
(v1.0)
Prpf39NM_177806328110
8.188115.65199
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0016960
(v1.0)
Prpf39NM_177806328110
1.056331.90064
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0016960
(v1.0)
1428171_atMm.283339Prpf39NM_177806.3328110
0077.525103.82540.85
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0016960
(v1.0)
A_51_P250358Prpf39NM_177806328110
11P0.9370.633P
Proteome N/A