DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0016962
GenePrpf40a
SynonymsFBP11
Fnbp3
Desc.PRP40 pre-mRNA processing factor 40 homolog A (yeast)
LocusNM_018785 chr2:52997509-53050221(-)
DB links


Entrez 56194
MGI 1860512
Ensembl ENSMUSG00000061136
Vega OTTMUSG00000012447
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2017458
(v2.0)
Prpf40aNM_01878556194
14.801733.02558.872188.3866107.73244.625134.802636.840588.219442.8007
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0016962
(v1.0)
Prpf40a56194
Major ZGA0.94533
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017458
(v2.0)
Prpf40a56194
680/3270.542480/3270.4364543/3274.28281291/3273.30256/327-3.506366/327-2.8798
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017458
(v2.0)
Prpf40a56194
384/1560.7829225/1560.4099534/1565.2711186/1564.23591/156-4.265635/156-2.7036
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017458
(v2.0)
Prpf40a56194
46.360417027.27
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017458
(v2.0)
Prpf40a56194
14.85413710.84
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016962
(v1.0)
Prpf40aNM_01878556194
34.303840.681665.760974.586624.6219
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016962
(v1.0)
Prpf40aFR188246,NM_01878556194
422.016635.7641077.371485.46287.996
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0016962
(v1.0)
Prpf40aNM_01878556194
35.86785.4131544.3845
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0016962
(v1.0)
Prpf40aNM_01878556194
35.010540.273127.2402
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0016962
(v1.0)
Prpf40aFR188246,NM_01878556194
517.067443.84
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0016962
(v1.0)
Prpf40aNM_01878556194
35.88865.3390129.8762
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0016962
(v1.0)
Prpf40aNM_01878556194
60.884372.016460.9591
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0016962
(v1.0)
Prpf40aFR188246,NM_01878556194
312.806272.876
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0016962
(v1.0)
Prpf40aNM_01878556194
25.451782.02
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0016962
(v1.0)
Prpf40aNM_01878556194
37.30239.8753
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0016962
(v1.0)
2204C0301F11-3Mm.87658Fnbp356194
U022635NAP092860-001Fnbp3;TC847699Q61049U,F,23.9674.30454.70834.27494.06214.45754.1873
0016962
(v1.0)
5780H3009A08-3Mm.87658Fnbp356194
U022635NAP092860-001Fnbp3;TC847699Q61049U,F,23.64933.60263.13543.41363.35193.28553.4079
0016962
(v1.0)
6138H3018D11-3Mm.87658Fnbp356194
U022635NAP092860-001Fnbp3;TC847699,TC847698Q61049U,F,23.43763.2783.16313.16623.36863.19333.351
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0016962
(v1.0)
1420916_atMm.257474Prpf40aNM_018785.256194
90.57598.1579.47585.47568.875
0016962
(v1.0)
1442171_atMm.257474Prpf40aNM_018785.256194
95.975.82500120.375
0016962
(v1.0)
1429436_atMm.257474Prpf40aNM_018785.256194
0212.30108.525115.775
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0016962
(v1.0)
A_51_P193446Fnbp3NM_01878556194
11P1.2590.323P
0016962
(v1.0)
A_52_P158576Fnbp3NM_01878556194
11P1.1360.423P
Proteome N/A