DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0016965
GenePrpf6
SynonymsANT-1
U5-102K
Desc.PRP6 pre-mRNA splicing factor 6 homolog (yeast)
LocusNM_133701 chr2:181336024-181390366(+)
DB links


Entrez 68879
MGI 1922946
Ensembl ENSMUSG00000002455
Vega OTTMUSG00000016808
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2017461
(v2.0)
Prpf6NM_13370168879
22.972949.131217.864411.468828.699124.901815.32616.269626.745327.1047
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0016965
(v1.0)
Prpf668879
Maternal RNA0.91402
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017461
(v2.0)
Prpf668879
671/479-0.0265410/479-0.3398236/4792.5498649/4791.764111/479-3.2736113/479-2.6668
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017461
(v2.0)
Prpf668879
227/187-0.2318174/187-0.2189164/1873.3298443/1872.55954/187-3.198937/187-2.8866
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017461
(v2.0)
Prpf668879
52.16715334.1
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017461
(v2.0)
Prpf668879
9.96228312
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016965
(v1.0)
Prpf6NM_13370168879
51.076212.39648.5428919.906810.8302
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016965
(v1.0)
Prpf6FR360005,NM_13370168879
535.341173.75477.1069138.41767.95
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0016965
(v1.0)
Prpf6NM_13370168879
53.40498.4014413.5247
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0016965
(v1.0)
Prpf6NM_13370168879
52.128412.271912.1812
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0016965
(v1.0)
Prpf6FR360005,NM_13370168879
220.783104.106
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0016965
(v1.0)
Prpf6NM_13370168879
53.43598.2863713.36
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0016965
(v1.0)
Prpf6NM_13370168879
7.9093819.220818.5015
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0016965
(v1.0)
Prpf6FR360005,NM_13370168879
170.913196.229
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0016965
(v1.0)
Prpf6NM_13370168879
101.9763.36919
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0016965
(v1.0)
Prpf6NM_13370168879
80.74862.9123
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0016965
(v1.0)
438C0106G12-3Mm.70392610031L17Rik68879
U002989NAP004681-0011190003A07Rik;2610031L17Rik;TC814611U,F4.12924.19323.42383.57523.18913.42513.2701
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0016965
(v1.0)
1424036_atMm.292001Prpf6NM_133701.268879
809.4751427244.75337.6382.45
0016965
(v1.0)
1454789_x_atMm.292001Prpf6NM_133701.268879
729.61262.3164.575266.4169.475
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0016965
(v1.0)
A_51_P2976942610031L17RikNM_13370168879
11P1.4460.168P
Proteome N/A