DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0017137
GenePtbp1
SynonymshnRNP I
Ptb
Desc.polypyrimidine tract binding protein 1
LocusNM_008956 chr10:79317350-79327178(+)
NM_001077363 chr10:79317350-79327178(+)
DB links


Entrez 19205
MGI 97791
Ensembl ENSMUSG00000006498
Vega OTTMUSG00000035444
Featureprotein-coding
GO(BP)
  •   4 Terms
      regulation of alternative mRNA splicing, via spliceosome (GO:0000381)
      negative regulation of RNA splicing (GO:0033119)
      negative regulation of mRNA splicing, via spliceosome (GO:0048025)
      negative regulation of muscle cell differentiation (GO:0051148)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2017639
(v2.0)
Ptbp1NM_001077363,NM_001283013,NM_00895619205
69.801274.0558171.212175.915145.152203.917119.412271.805148.653201.95
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0017137
(v1.0)
Ptbp119205
Major ZGA0.94658
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017639
(v2.0)
Ptbp119205
815/596-0.0612365/596-0.8218260/5962.3807870/5961.87266/596-4.3641141/596-2.666
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017639
(v2.0)
Ptbp119205
400/2520.1532170/252-0.6806199/2523.1998673/2522.73632/252-4.358250/252-2.8954
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017639
(v2.0)
Ptbp119205
78.457122235.34
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017639
(v2.0)
Ptbp119205
19.968315612.8
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017137
(v1.0)
Ptbp1NM_001077363,NM_00895619205
81.8959125.189139.016106.53590.5136
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017137
(v1.0)
Ptbp1NM_001077363,NM_00895619205
311.818470.799526.505448.323277.649
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0017137
(v1.0)
Ptbp1NM_001077363,NM_00895619205
85.629727.1746136.584
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0017137
(v1.0)
Ptbp1NM_001077363,NM_00895619205
83.5831123.932214.289
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0017137
(v1.0)
Ptbp1NM_001077363,NM_00895619205
542.1721371.67
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0017137
(v1.0)
Ptbp1NM_001077363,NM_00895619205
85.679526.8024235.025
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0017137
(v1.0)
Ptbp1NM_001077363,NM_00895619205
128.708102.863109.639
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0017137
(v1.0)
Ptbp1NM_001077363,NM_00895619205
258.047248.797
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0017137
(v1.0)
Ptbp1NM_001077363,NM_00895619205
49.998984.2433
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0017137
(v1.0)
Ptbp1NM_001077363,NM_00895619205
122.06166.1206
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0017137
(v1.0)
5848H3010A04-3Mm.19117Ptbp119205
U011726NAP031326-1Ptbp1;TC908500P17225U,F,23.25593.32352.70093.04453.17843.20283.2074
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0017137
(v1.0)
1424874_a_atMm.265610Ptbp1NM_001077363.1,NM_008956.219205
0300.5429.025340.25247.65
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0017137
(v1.0)
A_51_P462692Ptbp1NM_00895619205
11P1.2260.29P
0017137
(v1.0)
A_52_P234619Ptbp1NM_00895619205
11P0.4220.1P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0017137
(v1.0)
Ptbp119205
010010