DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0017139
GenePtcd1
Synonyms
Desc.pentatricopeptide repeat domain 1
LocusNM_133735 chr5:145908247-145927973(-)
DB links


Entrez 71799
MGI 1919049
Ensembl ENSMUSG00000029624
Vega OTTMUSG00000023010
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2017642
(v2.0)
Ptcd1NM_13373571799
9.8534619.963219.4187.00168.8661910.56228.9492223.659.1327910.6429
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0017139
(v1.0)
Ptcd171799
Maternal RNA0.96827
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017642
(v2.0)
Ptcd171799
723/4460.1837441/446-0.1322152/4462.0188360/4461.018110/446-3.2971104/446-2.6822
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017642
(v2.0)
Ptcd171799
352/1730.5095208/1730.1488138/1733.1876346/1732.31464/173-3.089254/173-2.2475
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017642
(v2.0)
Ptcd171799
82.059117147.99
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017642
(v2.0)
Ptcd171799
29.538611326.14
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017139
(v1.0)
Ptcd1NM_13373571799
20.755313.45535.204236.157816.28416
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017139
(v1.0)
Ptcd1NM_13373571799
98.734549.80714.959831.589124.3386
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0017139
(v1.0)
Ptcd1NM_13373571799
21.70163.6035114.68
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0017139
(v1.0)
Ptcd1NM_13373571799
21.182913.320217.5581
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0017139
(v1.0)
Ptcd1NM_13373571799
59.833598.5084
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0017139
(v1.0)
Ptcd1NM_13373571799
21.71423.5541619.2571
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0017139
(v1.0)
Ptcd1NM_13373571799
4.81835.945616.35283
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0017139
(v1.0)
Ptcd1NM_13373571799
34.499243.862
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0017139
(v1.0)
Ptcd1NM_13373571799
7.558210.209348
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0017139
(v1.0)
Ptcd1NM_13373571799
8.225855.51582
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0017139
(v1.0)
1416391_atMm.474456Ptcd1NM_133735.271799
35.17536.15000
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0017139
(v1.0)
A_51_P163079Ptcd1NM_13373571799
11P1.30.365P
Proteome N/A