DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0017141
GenePtcd3
Synonyms
Desc.pentatricopeptide repeat domain 3
LocusNM_027275 chr6:71830632-71858756(-)
DB links


Entrez 69956
MGI 1917206
Ensembl ENSMUSG00000063884
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2017644
(v2.0)
Ptcd3NM_02727569956
7.2539813.64428.075222.283225.626541.35226.858316.968219.959848.2215
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0017141
(v1.0)
Ptcd369956
Minor ZGA0.9937
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017644
(v2.0)
Ptcd369956
641/4480.004472/448-0.0408114/4481.6006286/4480.680811/448-3.17897/448-2.7877
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017644
(v2.0)
Ptcd369956
276/1890.0333193/189-0.0855104/1892.6633272/1891.84273/189-3.535933/189-3.0601
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017644
(v2.0)
Ptcd369956
67.979213151.89
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017644
(v2.0)
Ptcd369956
20.14778025.18
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017141
(v1.0)
Ptcd3NM_02727569956
14.182319.336916.567717.701618.9467
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017141
(v1.0)
Ptcd3NM_02727569956
310.728277.074171.559429.507320.862
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0017141
(v1.0)
Ptcd3NM_02727569956
14.82892.6528521.097
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0017141
(v1.0)
Ptcd3NM_02727569956
14.474519.142712.5471
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0017141
(v1.0)
Ptcd3NM_02727569956
595.847326.49
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0017141
(v1.0)
Ptcd3NM_02727569956
14.83752.6165213.7613
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0017141
(v1.0)
Ptcd3NM_02727569956
15.339117.091613.8265
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0017141
(v1.0)
Ptcd3FR296036,NM_02727569956
262.103145.982
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0017141
(v1.0)
Ptcd3NM_02727569956
8.9929428.4354
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0017141
(v1.0)
Ptcd3NM_02727569956
24.068116.1215
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0017141
(v1.0)
17971L0041B04-3Mm.302562810422B04Rik69956
U043849NAP002349-0012810422B04Rik;TC919702,TC919701Q9CZ12U,F,23.75623.90493.45743.66723.4453.59643.6311
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0017141
(v1.0)
1428090_atMm.30256Ptcd3NM_027275.369956
122.025176.475191.725182.075294.55
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0017141
(v1.0)
A_52_P3462562810422B04RikNM_02727569956
11P0.810.283P
0017141
(v1.0)
A_52_P4318722810422B04RikNM_02727569956
11P0.6320.136P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0017141
(v1.0)
Ptcd369956
010010