DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0017185
GenePtp4a1
SynonymsPrl-1
Desc.protein tyrosine phosphatase 4a1
LocusNM_011200 chr1:30997148-31006600(-)
DB links


Entrez 19243
MGI 1277096
Ensembl ENSMUSG00000026064
Vega OTTMUSG00000021326
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2017691
(v2.0)
Ptp4a1NM_011200,NR_00268819243
42.0199128.092256.271392.03317.11371.370624.1927176.195276.31984.7094
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0017185
(v1.0)
Ptp4a119243
2-Cell Transient0.98091
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017691
(v2.0)
Ptp4a119243
702/3450.5108497/3450.4094601/3454.35442360/3454.095594/3450.1799543/3450.0548
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017691
(v2.0)
Ptp4a119243
391/1430.9335246/1430.6627535/1435.38981769/1434.935819/143-0.8216132/143-0.7084
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017691
(v2.0)
Ptp4a119243
52.302612442.18
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017691
(v2.0)
Ptp4a119243
11.97048114.78
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017185
(v1.0)
Ptp4a1NM_01120019243
87.8618116.998195.998149.30611.8248
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017185
(v1.0)
Ptp4a1NM_011200,NR_00268819243
0.02766560.1331982.97332.614130.567393
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0017185
(v1.0)
Ptp4a1NM_01120019243
91.867510.5718127.647
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0017185
(v1.0)
Ptp4a1NM_01120019243
89.6718115.82386.3278
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0017185
(v1.0)
Ptp4a1NM_011200,NR_00268819243
0.135220.20222
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0017185
(v1.0)
Ptp4a1NM_01120019243
91.920910.42794.6814
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0017185
(v1.0)
Ptp4a1NM_01120019243
181.463144.161128.501
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0017185
(v1.0)
Ptp4a1NM_011200,NR_00268819243
2.585822.0094
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0017185
(v1.0)
Ptp4a1NM_01120019243
41.3242113.882
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0017185
(v1.0)
Ptp4a1NM_01120019243
12.825664.3195
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0017185
(v1.0)
11616H3119G03-3Mm.28909Ptp4a119243
U021199NAP092217-001TC903521,TC903520Q63739U,F,24.49264.37093.59123.9283.73083.86623.6013
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0017185
(v1.0)
1449322_atMm.374437Ptp4a1NM_011200.219243
453.75981.7751736.7251299.25410.55
0017185
(v1.0)
1455002_atMm.374437Ptp4a1NM_011200.219243
66.868.2584.925241.875204.425
0017185
(v1.0)
1438657_x_atMm.374437Ptp4a1NM_011200.219243
3044.45735.9755801.957063.82686.425
0017185
(v1.0)
1419024_atMm.374437Ptp4a1NM_011200.219243
0017.675340
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0017185
(v1.0)
A_51_P128526Ptp4a1NM_01120019243
11P1.0680.629P
0017185
(v1.0)
A_51_P370975Ptp4a1NM_01120019243
11P0.9920.952P
0017185
(v1.0)
A_52_P587378Ptp4a1NM_01120019243
11P0.7450.209P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0017185
(v1.0)
Ptp4a119243
010010