DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0017351
GeneRab3a
Synonyms
Desc.RAB3A, member RAS oncogene family
LocusNM_001166399 chr8:73278578-73282585(+)
NM_009001 chr8:73278578-73282585(+)
DB links


Entrez 19339
MGI 97843
Ensembl ENSMUSG00000031840
Vega OTTMUSG00000016949
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2017866
(v2.0)
Rab3aNM_001166399,NM_00900119339
6.2564827.614230.567811.25665.646773.826385.810133.95475.150852.98537
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0017351
(v1.0)
Rab3a19339
Minor ZGA0.94822
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017866
(v2.0)
Rab3a19339
767/542-0.0119379/542-0.630869/5420.6163294/5420.447138/5420.0835831/5420.0172
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017866
(v2.0)
Rab3a19339
362/2400.0798178/240-0.544659/2401.5299259/2401.4317113/2400.959611/2400.7464
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017866
(v2.0)
Rab3a19339
118.577419660.5
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017866
(v2.0)
Rab3a19339
36.525610534.79
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017351
(v1.0)
Rab3aNM_001166399,NM_00900119339
28.710121.03138.364573.918644.09966
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017351
(v1.0)
Rab3aNM_001166399,NM_00900119339
34.63622.93679.330234.486434.73792
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0017351
(v1.0)
Rab3aNM_001166399,NM_00900119339
30.0192.2881122.9456
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0017351
(v1.0)
Rab3aNM_001166399,NM_00900119339
29.301620.820125.2128
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0017351
(v1.0)
Rab3aNM_001166399,NM_00900119339
23.415828.8103
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0017351
(v1.0)
Rab3aNM_001166399,NM_00900119339
30.03652.2567727.6525
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0017351
(v1.0)
Rab3aNM_001166399,NM_00900119339
7.744293.78363.57133
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0017351
(v1.0)
Rab3aNM_001166399,NM_00900119339
4.437924.23881
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0017351
(v1.0)
Rab3aNM_001166399,NM_00900119339
37.83563.12783
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0017351
(v1.0)
Rab3aNM_001166399,NM_00900119339
20.87937.6889
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0017351
(v1.0)
20850L0815F12-3Rab3a19339
U009442NAP006196-001Rab3a;TC830908,TC830907P05713U,F3.66523.81893.98293.7773.39663.63043.342
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0017351
(v1.0)
1459980_x_atMm.5083Rab3aNM_001166399.2,NM_009001.619339
1291.3751910.525000
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0017351
(v1.0)
A_52_P276397Rab3aNM_00900119339
11P1.1320.432P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0017351
(v1.0)
Rab3a19339
001001