DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0017368
GeneRab5c
Synonyms
Desc.RAB5C, member RAS oncogene family
LocusNM_024456 chr11:100576580-100599444(-)
DB links


Entrez 19345
MGI 105306
Ensembl ENSMUSG00000019173
Vega OTTMUSG00000002056
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2017883
(v2.0)
Rab5cNM_02445619345
207.568101.995169.9728.812168.540158.816886.4539225.81954.118362.4932
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0017368
(v1.0)
Rab5c19345
Minor ZGA0.92353
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017883
(v2.0)
Rab5c19345
673/550-0.2212370/550-0.6865123/5501.4205372/5500.764458/550-1.1737436/550-0.9321
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017883
(v2.0)
Rab5c19345
315/2130.0514146/213-0.6572105/2132.5143305/2131.83720/213-1.3125137/213-1.2269
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017883
(v2.0)
Rab5c19345
72.049113453.77
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017883
(v2.0)
Rab5c19345
28.24838832.1
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017368
(v1.0)
Rab5cNM_02445619345
106.043117.82521.452547.536561.4046
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017368
(v1.0)
Rab5cNM_02445619345
130.304131.87224.972858.415972.2834
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0017368
(v1.0)
Rab5cNM_02445619345
110.87875.9098128.55
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0017368
(v1.0)
Rab5cNM_02445619345
108.228116.642167.46
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0017368
(v1.0)
Rab5cNM_02445619345
133.477196.883
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0017368
(v1.0)
Rab5cNM_02445619345
110.94274.8701183.664
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0017368
(v1.0)
Rab5cNM_02445619345
19.861645.898437.5132
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0017368
(v1.0)
Rab5cNM_02445619345
57.784346.81
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0017368
(v1.0)
Rab5cNM_02445619345
104.2694.94451
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0017368
(v1.0)
Rab5cNM_02445619345
1.756972.12842
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0017368
(v1.0)
1424684_atMm.29829Rab5cNM_024456.419345
0170.55000
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0017368
(v1.0)
A_51_P486479Rab5cNM_02445619345
11P0.2880.0509P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0017368
(v1.0)
Rab5c19345
1.51.521.542