DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0017371
GeneRab7
Synonyms
Desc.RAB7, member RAS oncogene family
LocusNM_009005 chr6:87950429-87963684(-)
DB links


Entrez 19349
MGI 105068
Ensembl ENSMUSG00000079477
Vega OTTMUSG00000024646
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2017886
(v2.0)
Rab7NM_001293652,NM_001293653,NM_001293654,NM_001293655,NM_00900519349
127.356146.908264.477103.04987.927651.560450.5543249.74385.887652.4067
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0017371
(v1.0)
Rab719349
Minor ZGA0.96285
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017886
(v2.0)
Rab719349
544/402-0.0762393/402-0.148549/4020.551280/4020.80579/402-3.286258/402-3.3588
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017886
(v2.0)
Rab719349
218/180-0.2351150/180-0.376810/180-0.525562/180-0.20333/180-3.467124/180-3.4259
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017886
(v2.0)
Rab719349
82.93478795.33
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017886
(v2.0)
Rab719349
30.68113295.88
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017371
(v1.0)
Rab7NM_00900519349
495.789576.861256.999195.659101.789
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017371
(v1.0)
Rab7NM_00900519349
216.286200.46797.127977.39743.5263
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0017371
(v1.0)
Rab7NM_00900519349
518.393170.339629.367
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0017371
(v1.0)
Rab7NM_00900519349
506.002571.068515.364
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0017371
(v1.0)
Rab7NM_00900519349
203.537158.38
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0017371
(v1.0)
Rab7NM_00900519349
518.694168.006565.234
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0017371
(v1.0)
Rab7NM_00900519349
237.941188.916200.493
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0017371
(v1.0)
Rab7NM_00900519349
76.558980.1797
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0017371
(v1.0)
Rab7NM_00900519349
434.091612.211
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0017371
(v1.0)
Rab7NM_00900519349
52.397928.0609
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0017371
(v1.0)
18628L0218C11-3Mm.4268Rab719349
U027590NAP096475-001Rab7;TC924434,TC924430P51150U,F,24.06654.12463.53183.7163.49133.60083.5492
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0017371
(v1.0)
1415734_atMm.333233Rab7NM_009005.219349
1646.152665.1252061.925719.31172.8
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0017371
(v1.0)
A_51_P136883Rab7NM_00900519349
11P0.7170.186P
0017371
(v1.0)
A_52_P653719Rab7NM_00900519349
11P0.8110.283P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0017371
(v1.0)
Rab719349
14116312423