DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0017401
GeneRad23b
SynonymsmHR23B
Desc.RAD23b homolog (S. cerevisiae)
LocusNM_009011 chr4:55362914-55405109(+)
DB links


Entrez 19359
MGI 105128
Ensembl ENSMUSG00000028426
Vega OTTMUSG00000007227
Featureprotein-coding
GO(BP)
  •   7 Terms
      nucleotide-excision repair, DNA damage recognition (GO:0000715)
      DNA repair (GO:0006281)
      nucleotide-excision repair (GO:0006289)
      response to DNA damage stimulus (GO:0006974)
      spermatogenesis (GO:0007283)
      regulation of proteasomal ubiquitin-dependent protein catabolic process (GO:0032434)
      proteasomal ubiquitin-dependent protein catabolic process (GO:0043161)
GO(MF)
GO(CC)
KEGG
  •   2 Terms
      Nucleotide excision repair (mmu03420)
      Protein processing in endoplasmic reticulum (mmu04141)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2017914
(v2.0)
Rad23bNM_00901119359
111.944133.782227.75991.1273106.3374.840355.1706215.39795.743476.5062
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0017401
(v1.0)
Rad23b19359
Minor ZGA0.98693
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017914
(v2.0)
Rad23b19359
744/4300.2776424/430-0.1361160/4302.1436373/4301.121618/430-2.4564156/430-2.0515
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017914
(v2.0)
Rad23b19359
399/1900.5551219/1900.0883157/1903.2457344/1902.17295/190-2.958462/190-2.1878
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017914
(v2.0)
Rad23b19359
42.777213032.91
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017914
(v2.0)
Rad23b19359
12.56229812.82
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017401
(v1.0)
Rad23bNM_00901119359
139.045157.56567.873373.742939.0002
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017401
(v1.0)
Rad23bNM_00901119359
64713.894404.941431.5326958896.14
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0017401
(v1.0)
Rad23bNM_00901119359
145.38440.9392171.907
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0017401
(v1.0)
Rad23bNM_00901119359
141.91155.983159.435
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0017401
(v1.0)
Rad23bNM_00901119359
145.479151.982
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0017401
(v1.0)
Rad23bNM_00901119359
145.46940.3785174.863
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0017401
(v1.0)
Rad23bNM_00901119359
62.840171.201766.1872
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0017401
(v1.0)
Rad23bNM_00901119359
65.466958.8376
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0017401
(v1.0)
Rad23bNM_00901119359
80.513317.9151
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0017401
(v1.0)
Rad23bNM_00901119359
9.777829.162
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0017401
(v1.0)
3697C0856H09-3Mm.210247U004351NAP014138-001Rad23b;TC925950P54728U,F,22.13362.45262.27362.29572.23622.32022.4002
0017401
(v1.0)
10686H3102B09-3Mm.1963Rad23b19359
U004352NAP039144-1TC863283,TC863277P54728U,F,23.31843.63283.27863.29733.40193.64033.5299
0017401
(v1.0)
20879L0817F10-3Rad23b19359
U004353NAP023000-001TC863279U,F,22.8582.8952.39862.27722.63482.62352.6327
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0017401
(v1.0)
1450903_atMm.196846Rad23bNM_009011.419359
110.1592.15249.925130.9123.65
0017401
(v1.0)
1424222_s_atMm.196846Rad23bNM_009011.419359
689.151140.7251530.925740.825754.025
0017401
(v1.0)
1455420_atMm.196846Rad23bNM_009011.419359
299.725291.125249.175323.375264.675
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0017401
(v1.0)
A_52_P213881Rad23bNM_00901119359
11P0.780.243P
0017401
(v1.0)
A_52_P416147Rad23bAK01871019359
11P0.4830.0874P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0017401
(v1.0)
Rad23b19359
81210496137