DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0017422
GeneRaf1
Synonymsc-Raf
Craf1
Raf-1
sarcoma 3611 oncogene
v-Raf
Desc.v-raf-leukemia viral oncogene 1
LocusNM_029780 chr6:115568591-115626653(-)
DB links


Entrez 110157
MGI 97847
Ensembl ENSMUSG00000000441
Vega OTTMUSG00000020697
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2017935
(v2.0)
Raf1NM_029780110157
23.9296185.908359.025184.86475.116737.9234.4603364.87379.211534.7755
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0017422
(v1.0)
Raf1110157
Minor ZGA0.95337
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017935
(v2.0)
Raf1110157
771/3940.4547436/3940.0299214/3942.6834460/3941.548733/394-1.492216/394-1.4601
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017935
(v2.0)
Raf1110157
470/1910.7831210/1910.0205203/1913.6072437/1912.50986/191-2.743472/191-1.9843
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017935
(v2.0)
Raf1110157
46.844812039.04
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017935
(v2.0)
Raf1110157
11.98488214.62
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017422
(v1.0)
Raf1NM_029780110157
193.288249.053137.77552.113324.4645
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017422
(v1.0)
Raf1NM_029780110157
510.333517.546344.494136.061103.868
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0017422
(v1.0)
Raf1NM_029780110157
202.18.75131271.723
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0017422
(v1.0)
Raf1NM_029780110157
197.27246.553270.308
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0017422
(v1.0)
Raf1NM_029780110157
1778.241355.39
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0017422
(v1.0)
Raf1NM_029780110157
202.2188.63145296.465
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0017422
(v1.0)
Raf1NM_029780110157
127.55850.317554.8923
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0017422
(v1.0)
Raf1NM_029780110157
177.263215.15
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0017422
(v1.0)
Raf1NM_029780110157
35.079417.0526
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0017422
(v1.0)
Raf1NM_029780110157
100.511147.848
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0017422
(v1.0)
11521H3117E08-3Mm.22467Raf1110157
U027753NAP120831-001Raf1;TC940836,TC940832,TC940830Q9CU36U,F,24.28774.33183.70713.75633.27873.49583.4978
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0017422
(v1.0)
1425419_a_atMm.184163Raf1NM_029780.3110157
665.051302.2751123.175154252.925
0017422
(v1.0)
1416078_s_atMm.184163Raf1NM_029780.3110157
926.62049.6251601.75251.975390.75
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0017422
(v1.0)
A_51_P404204Raf1NM_029780110157
11P1.3280.215P
0017422
(v1.0)
A_52_P214058Raf1NM_029780110157
11P0.8550.366P
0017422
(v1.0)
A_52_P412600Raf1NM_029780110157
11P0.3210.0643P
Proteome N/A