DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0017454
GeneRap1b
Synonyms
Desc.RAS related protein 1b
LocusNM_024457 chr10:117251653-117283030(-)
DB links


Entrez 215449
MGI 894315
Ensembl ENSMUSG00000052681
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2017967
(v2.0)
Rap1bNM_024457215449
118.57789.356209.589125.226105.97454.258528.1489147.29182.825158.4014
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0017454
(v1.0)
Rap1b215449
Minor ZGA0.95769
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017967
(v2.0)
Rap1b215449
710/4060.2929463/4060.0732160/4062.2242498/4061.619945/406-1.0987348/406-0.819
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017967
(v2.0)
Rap1b215449
359/1670.5884225/1670.3122132/1673.1714386/1672.522210/167-1.902120/167-1.0667
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017967
(v2.0)
Rap1b215449
46.730313335.14
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017967
(v2.0)
Rap1b215449
13.50388815.35
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017454
(v1.0)
Rap1bNM_024457215449
92.849144.49693.21273.453219.6245
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017454
(v1.0)
Rap1bNM_024457215449
580.268777.677521.934421.83267.9474
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0017454
(v1.0)
Rap1bNM_024457215449
97.082143.3647157.648
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0017454
(v1.0)
Rap1bNM_024457215449
94.7618143.045108.773
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0017454
(v1.0)
Rap1bNM_024457215449
801.07657.326
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0017454
(v1.0)
Rap1bNM_024457215449
97.138542.7707119.299
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0017454
(v1.0)
Rap1bNM_024457215449
86.299870.92257.1266
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0017454
(v1.0)
Rap1bNM_024457215449
308.767293.533
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0017454
(v1.0)
Rap1bNM_024457215449
45.434169.9263
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0017454
(v1.0)
Rap1bNM_024457215449
51.547494.8648
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0017454
(v1.0)
6136H3018D04-3Mm.233009LOC215449215449
U032262NAP006916-001TC935091Q99JI6U,F,24.4314.51473.54333.72933.62973.77943.9329
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0017454
(v1.0)
1455349_atMm.233009Rap1bNM_024457.2215449
235.475509.1467.275195.6219.7
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0017454
(v1.0)
A_52_P203031Rap1bNM_024457215449
11P0.570.183P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0017454
(v1.0)
Rap1b215449
5429104