DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0017461
GeneRapgef1
SynonymsC3G
Grf2
Desc.Rap guanine nucleotide exchange factor (GEF) 1
LocusNM_054050 chr2:29475240-29595883(+)
NM_001039087 chr2:29475240-29595883(+)
NM_001039086 chr2:29475240-29595883(+)
DB links


Entrez 107746
MGI 104580
Ensembl ENSMUSG00000039844
Vega OTTMUSG00000012043
Featureprotein-coding
GO(BP)
  •   4 Terms
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2017974
(v2.0)
Rapgef1NM_001039086,NM_001039087,NM_054050107746
40.005518.726323.33195.450886.7464911.674520.530826.95687.0863711.0195
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0017461
(v1.0)
Rapgef1107746
Minor ZGA0.96944
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017974
(v2.0)
Rapgef1107746
595/476-0.1905328/476-0.6517114/4761.5154414/4761.125853/476-1.0947428/476-0.7506
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017974
(v2.0)
Rapgef1107746
251/191-0.1181131/191-0.655984/1912.3442278/1911.859115/191-1.5508136/191-1.0809
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017974
(v2.0)
Rapgef1107746
75.70511565.83
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017974
(v2.0)
Rapgef1107746
38.40917551.21
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017461
(v1.0)
Rapgef1NM_001039086,NM_001039087,NM_054050107746
19.470916.20224.055194.6689414.4828
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017461
(v1.0)
Rapgef1NM_001039086,NM_001039087,NM_054050107746
291.398252.32781.4767.0812211.294
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0017461
(v1.0)
Rapgef1NM_001039086,NM_001039087,NM_054050107746
20.358714.630417.6769
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0017461
(v1.0)
Rapgef1NM_001039086,NM_001039087,NM_054050107746
19.872116.039519.9542
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0017461
(v1.0)
Rapgef1NM_001039086,NM_001039087,NM_054050107746
255.136361.282
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0017461
(v1.0)
Rapgef1NM_001039086,NM_001039087,NM_054050107746
20.370514.4321.8851
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0017461
(v1.0)
Rapgef1NM_001039086,NM_001039087,NM_054050107746
3.754474.508054.92024
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0017461
(v1.0)
Rapgef1NM_001039086,NM_001039087,NM_054050107746
76.9706147.834
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0017461
(v1.0)
Rapgef1NM_001039086,NM_001039087,NM_054050107746
4.407421.84768
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0017461
(v1.0)
Rapgef1NM_001039086,NM_001039087,NM_054050107746
1.263561.86961
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0017461
(v1.0)
1427006_atMm.298274Rapgef1NM_001039087.1,NM_001039086.1,NM_054050.2107746
159.525145.525000
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0017461
(v1.0)
A_51_P406519Rapgef1AK077034107746
11P0.7650.231P
Proteome N/A