DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0017462
GeneRapgef2
SynonymsCNRasGEF
nRapGEP
Pdzgef1
RA-GEF-1
Desc.Rap guanine nucleotide exchange factor (GEF) 2
LocusNM_001099624 chr3:78866451-78949797(-)
DB links


Entrez 76089
MGI 2659071
Ensembl ENSMUSG00000062232
Vega OTTMUSG00000031912
Featureprotein-coding
GO(BP)
  •   5 Terms
      signal transduction (GO:0007165)
      small GTPase mediated signal transduction (GO:0007264)
      positive regulation of Rap GTPase activity (GO:0032854)
      regulation of synaptic plasticity (GO:0048167)
      regulation of small GTPase mediated signal transduction (GO:0051056)
GO(MF)
  •   4 Terms
GO(CC)
KEGG
  •   1 Terms
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2017975
(v2.0)
Rapgef2NM_00109962476089
3.7753511.037914.73645.964425.318062.075459.8854314.54346.092412.24198
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0017462
(v1.0)
Rapgef276089
Minor ZGA0.99858
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017975
(v2.0)
Rapgef276089
545/437-0.1937402/437-0.236112/437-1.509527/437-2.641130/437-1.7732273/437-1.2734
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017975
(v2.0)
Rapgef276089
234/186-0.1806176/186-0.19486/186-1.221910/186-2.767811/186-1.9283140/186-1.0014
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017975
(v2.0)
Rapgef276089
110.579611695.33
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017975
(v2.0)
Rapgef276089
48.06365096.13
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017462
(v1.0)
Rapgef2NM_00109962476089
11.472910.20884.439353.688846.99387
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017462
(v1.0)
Rapgef2NM_00109962476089
89.992697.289937.532823.730142.3129
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0017462
(v1.0)
Rapgef2NM_00109962476089
11.9961.3806911.138
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0017462
(v1.0)
Rapgef2NM_00109962476089
11.709310.106310.7765
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0017462
(v1.0)
Rapgef2NM_00109962476089
201.01289.0388
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0017462
(v1.0)
Rapgef2NM_00109962476089
12.00291.3617711.8193
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0017462
(v1.0)
Rapgef2NM_00109962476089
4.110153.561724.20984
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0017462
(v1.0)
Rapgef2NM_00109962476089
26.180330.1981
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0017462
(v1.0)
Rapgef2NM_00109962476089
9.350045.0554
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0017462
(v1.0)
Rapgef2NM_00109962476089
1.056820.928698
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0017462
(v1.0)
21325L0847A05-35830453M24Rik76089
U024168NAP095468-001TC8598723.05113.1682.72632.8842.67212.81962.9686
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0017462
(v1.0)
1452833_atMm.31220Rapgef2NM_001099624.276089
588.625579.45384.625415.575764.85
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0017462
(v1.0)
A_51_P289912Rapgef2XM_20399976089
11P0.9950.967P
Proteome N/A