DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0017465
GeneRapgef5
Synonymsmr-gef
Desc.Rap guanine nucleotide exchange factor (GEF) 5
LocusNM_175930 chr12:118754952-118995451(+)
DB links


Entrez 217944
MGI 2444365
Ensembl ENSMUSG00000041992
Featureprotein-coding
GO(BP)
  •   3 Terms
      small GTPase mediated signal transduction (GO:0007264)
      intracellular signal transduction (GO:0035556)
      regulation of small GTPase mediated signal transduction (GO:0051056)
GO(MF)
  •   3 Terms
      guanyl-nucleotide exchange factor activity (GO:0005085)
      Rap guanyl-nucleotide exchange factor activity (GO:0017034)
      GTP-dependent protein binding (GO:0030742)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2017978
(v2.0)
Rapgef5NM_175930217944
0.42168275.2737141.04926.9594.941161.500350.172489133.1749.640881.44879
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0017465
(v1.0)
Rapgef5217944
Minor ZGA0.99689
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017978
(v2.0)
Rapgef5217944
678/505-0.0876432/505-0.3407119/5051.4936482/5051.2599194/5050.67311365/5050.8339
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017978
(v2.0)
Rapgef5217944
273/211-0.1405172/211-0.408899/2112.4432423/2112.32186/2110.7514546/2110.7695
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017978
(v2.0)
Rapgef5217944
97.20510394.37
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017978
(v2.0)
Rapgef5217944
38.21584095.54
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017465
(v1.0)
Rapgef5NM_175930217944
78.220997.687120.06073.420240.125742
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017465
(v1.0)
Rapgef5FR404737,NM_175930217944
599.882615.33172.06917.72710.953733
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0017465
(v1.0)
Rapgef5NM_175930217944
81.78710.154213106.579
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0017465
(v1.0)
Rapgef5NM_175930217944
79.832396.706298.5344
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0017465
(v1.0)
Rapgef5FR404737,NM_175930217944
624.836626.373
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0017465
(v1.0)
Rapgef5NM_175930217944
81.83470.152101108.069
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0017465
(v1.0)
Rapgef5NM_175930217944
18.57313.302386.72405
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0017465
(v1.0)
Rapgef5FR404737,NM_175930217944
34.698200.095
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0017465
(v1.0)
Rapgef5NM_175930217944
52.391516.4501
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0017465
(v1.0)
Rapgef5NM_175930217944
9.129458.03648
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0017465
(v1.0)
8015H3058D03-3Mm.110074932413M22217944
U014489NAP096564-001D030051B22Rik;TC794885U,F,23.73373.80373.11412.95662.31922.32912.4783
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0017465
(v1.0)
1455137_atMm.227642Rapgef5NM_175930.5217944
2260.3752208.61254.0500
0017465
(v1.0)
1455840_atMm.227642Rapgef5NM_175930.5217944
4275.25604.23579.3135.45152.475
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0017465
(v1.0)
A_51_P516860Rapgef5AK122234217944
11P0.9130.528P
0017465
(v1.0)
A_51_P516861Rapgef5AK122234217944
11P0.7830.246P
Proteome N/A