DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0017571
GeneRbm8a
SynonymsRbm8
Desc.RNA binding motif protein 8a
LocusNM_025875 chr3:96433851-96437714(+)
NM_001102407 chr3:96433851-96437714(+)
DB links


Entrez 60365
MGI 1913129
Ensembl ENSMUSG00000038374
Featureprotein-coding
GO(BP)
  •   1 Terms
      nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (GO:0000184)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018089
(v2.0)
Rbm8aNM_001102407,NM_02587560365
11.7867.768667.565516.227923.867778.050810.70227.0695326.731189.5569
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0017571
(v1.0)
Rbm8a60365
MGA0.99882
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018089
(v2.0)
Rbm8a60365
486/405-0.2491400/405-0.1338100/4051.5549278/4050.784717/405-2.4488120/405-2.3397
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018089
(v2.0)
Rbm8a60365
197/164-0.2467155/164-0.196397/1642.7552250/1641.92337/164-2.335932/164-2.8989
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018089
(v2.0)
Rbm8a60365
56.455111648.67
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018089
(v2.0)
Rbm8a60365
22.96967829.45
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017571
(v1.0)
Rbm8aNM_001102407,NM_02587560365
8.072235.2434112.084916.55557.60524
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017571
(v1.0)
Rbm8aNM_001102407,NM_02587560365
23.128914.717324.336442.102314.6096
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0017571
(v1.0)
Rbm8aNM_001102407,NM_02587560365
8.440264.310275.72068
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0017571
(v1.0)
Rbm8aNM_001102407,NM_02587560365
8.238535.190775.23292
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0017571
(v1.0)
Rbm8aNM_001102407,NM_02587560365
121.616340.861
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0017571
(v1.0)
Rbm8aNM_001102407,NM_02587560365
8.445164.251245.73929
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0017571
(v1.0)
Rbm8aNM_001102407,NM_02587560365
11.188715.98518.4852
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0017571
(v1.0)
Rbm8aNM_001102407,NM_02587560365
444.4422.76
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0017571
(v1.0)
Rbm8aNM_001102407,NM_02587560365
7.5367236.8659
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0017571
(v1.0)
Rbm8aNM_001102407,NM_02587560365
1.216111.54489
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0017571
(v1.0)
1418119_atMm.261972Rbm8aNM_001102407.1,NM_025875.260365
631.55270.7753026.0752878.4253134.425
Agilent44K N/A
Proteome N/A