DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0017590
GeneRc3h1
Synonymsroquin
Desc.RING CCCH (C3H) domains 1
LocusNM_001024952 chr1:162836542-162905107(+)
DB links


Entrez 381305
MGI 2685397
Ensembl ENSMUSG00000040423
Vega OTTMUSG00000034799
Featureprotein-coding
GO(BP)
  •   10 Terms
      nuclear-transcribed mRNA catabolic process (GO:0000956)
      regulation of germinal center formation (GO:0002634)
      negative regulation of germinal center formation (GO:0002635)
      posttranscriptional regulation of gene expression (GO:0010608)
      negative regulation of B cell proliferation (GO:0030889)
      cytoplasmic mRNA processing body assembly (GO:0033962)
      regulation of mRNA stability (GO:0043488)
      negative regulation of T-helper cell differentiation (GO:0045623)
      negative regulation of activated T cell proliferation (GO:0046007)
      regulation of T cell receptor signaling pathway (GO:0050856)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018108
(v2.0)
Rc3h1NM_001024952381305
2.602269.9042521.865525.867926.14823.1813817.098221.018925.17343.04317
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0017590
(v1.0)
Rc3h1381305
MGA0.98319
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018108
(v2.0)
Rc3h1381305
738/3350.6251540/3350.5712570/3354.31911519/3353.502392/3350.1911569/3350.1645
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018108
(v2.0)
Rc3h1381305
434/1441.0736270/1440.7865551/1445.42291351/1444.537219/144-0.8313140/144-0.6344
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018108
(v2.0)
Rc3h1381305
38.93238645.27
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018108
(v2.0)
Rc3h1381305
6.01464912.27
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017590
(v1.0)
Rc3h1NM_001024952381305
10.293615.06519.248818.120411.9873
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017590
(v1.0)
Rc3h1NM_001024952381305
40.314647.59276.836763.155427.9957
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0017590
(v1.0)
Rc3h1NM_001024952381305
10.76290.95167416.4362
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0017590
(v1.0)
Rc3h1NM_001024952381305
10.505614.913715.5412
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0017590
(v1.0)
Rc3h1NM_001024952381305
156.522200.412
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0017590
(v1.0)
Rc3h1NM_001024952381305
10.76910.9386417.0451
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0017590
(v1.0)
Rc3h1NM_001024952381305
17.821417.49617.3794
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0017590
(v1.0)
Rc3h1NM_001024952381305
89.8212116.121
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0017590
(v1.0)
Rc3h1NM_001024952381305
10.2910.3504
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0017590
(v1.0)
Rc3h1NM_001024952381305
1.230232.12422
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0017590
(v1.0)
1434933_atMm.329667Rc3h1NM_001024952.2381305
589.725000924.975
Agilent44K N/A
Proteome N/A