DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0017597
GeneRcc1
SynonymsChc1
Desc.regulator of chromosome condensation 1
LocusNM_001197082 chr4:131887834-131901665(-)
NM_133878 chr4:131887834-131901665(-)
DB links


Entrez 100088
MGI 1913989
Ensembl ENSMUSG00000028896
Vega OTTMUSG00000009575
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018115
(v2.0)
Rcc1NM_001197082,NM_133878100088
71.73917.7022524.361628.604241.144853.4187.0014429.468733.501854.9627
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0017597
(v1.0)
Rcc1100088
MGA0.98437
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018115
(v2.0)
Rcc1100088
761/4310.3068508/4310.12071080/4314.88763243/4314.234931/431-1.7076188/431-1.7881
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018115
(v2.0)
Rcc1100088
360/1800.4849227/1800.2174655/1805.37261806/1804.638812/180-1.766693/180-1.5367
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018115
(v2.0)
Rcc1100088
69.032212654.79
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018115
(v2.0)
Rcc1100088
19.61827526.16
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017597
(v1.0)
Rcc1NM_001197082,NM_133878100088
8.0070116.921221.290628.47154.99133
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017597
(v1.0)
Rcc1FR006994,NM_001197082,NM_133878100088
9.9692120.096241.06357.08949.26145
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0017597
(v1.0)
Rcc1NM_001197082,NM_133878100088
8.3720626.23618.4614
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0017597
(v1.0)
Rcc1NM_001197082,NM_133878100088
8.1719616.751321.8047
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0017597
(v1.0)
Rcc1FR006994,NM_001197082,NM_133878100088
88.436289.5334
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0017597
(v1.0)
Rcc1NM_001197082,NM_133878100088
8.3769325.876623.9146
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0017597
(v1.0)
Rcc1NM_001197082,NM_133878100088
19.711827.490423.1742
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0017597
(v1.0)
Rcc1FR006994,NM_001197082,NM_133878100088
117.63131.81
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0017597
(v1.0)
Rcc1NM_001197082,NM_133878100088
7.0158618.0601
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0017597
(v1.0)
Rcc1NM_001197082,NM_133878100088
25.703228.9851
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0017597
(v1.0)
5975H3014B08-3Mm.1542984931417M11Rik100088
U025596NAP004083-0014931417M11Rik;TC799434U,F,23.58813.39753.40533.4493.73223.53333.6327
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0017597
(v1.0)
1416962_atMm.255045Rcc1NM_001197082.1,NM_133878.3100088
0248.5750278.575156.55
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0017597
(v1.0)
A_51_P199927Chc1NM_133878100088
11P1.4360.189P
Proteome N/A