DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0017614
GeneRdh10
SynonymsD1Ertd762e
m366Asp
Desc.retinol dehydrogenase 10 (all-trans)
LocusNM_133832 chr1:16095963-16122631(+)
DB links


Entrez 98711
MGI 1924238
Ensembl ENSMUSG00000025921
Vega OTTMUSG00000025248
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018132
(v2.0)
Rdh10NM_13383298711
1.9066786.3981107.08750.668463.87711.379016.70579103.26757.3561.92936
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0017614
(v1.0)
Rdh1098711
Minor ZGA0.93096
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018132
(v2.0)
Rdh1098711
887/4410.4944665/4410.47551291/4415.11273245/4414.202989/441-0.2486556/441-0.2644
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018132
(v2.0)
Rdh1098711
600/1941.1121370/1940.81211058/1945.96212280/1944.868266/1940.4933431/1940.5499
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018132
(v2.0)
Rdh1098711
79.891519740.55
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018132
(v2.0)
Rdh1098711
13.369311811.33
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017614
(v1.0)
Rdh10NM_13383298711
89.781873.979437.721944.4884.82718
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017614
(v1.0)
Rdh10FR392406,NM_13383298711
353.21264.713156.226172.40218.7745
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0017614
(v1.0)
Rdh10NM_13383298711
93.87520.69728980.7131
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0017614
(v1.0)
Rdh10NM_13383298711
91.631473.236676.5147
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0017614
(v1.0)
Rdh10FR392406,NM_13383298711
493.022471.623
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0017614
(v1.0)
Rdh10NM_13383298711
93.92970.68773983.9187
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0017614
(v1.0)
Rdh10NM_13383298711
34.924642.954939.6545
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0017614
(v1.0)
Rdh10FR392406,NM_13383298711
170.718166.136
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0017614
(v1.0)
Rdh10NM_13383298711
48.708220.7885
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0017614
(v1.0)
Rdh10NM_13383298711
21.164319.2071
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0017614
(v1.0)
11798H3123C06-3Mm.416573110069K09Rik98711
3110069K09Rik3.53723.41143.31143.41543.44993.29013.3326
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0017614
(v1.0)
1426968_a_atMm.274376Rdh10NM_133832.398711
992.075967.75948.7688.85152.15
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0017614
(v1.0)
A_52_P421234Rdh10NM_13383298711
11P1.5380.145P
0017614
(v1.0)
A_52_P59318Rdh10NM_13383298711
11P0.9450.675P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0017614
(v1.0)
Rdh1098711
111111