DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0017627
GeneRdx
Synonyms
Desc.radixin
LocusNM_001104616 chr9:51855255-51896843(+)
NM_001104617 chr9:51856046-51883282(+)
NM_009041 chr9:51856046-51896843(+)
DB links


Entrez 19684
MGI 97887
Ensembl ENSMUSG00000032050
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
  •   1 Terms
      Regulation of actin cytoskeleton (mmu04810)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018145
(v2.0)
RdxNM_001104616,NM_001104617,NM_00904119684
21.1871691.496148.17266.966947.615941.754659.8819100.25768.93238.1496
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0017627
(v1.0)
Rdx19684
Maternal RNA0.99823
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018145
(v2.0)
Rdx19684
755/4050.3849545/4050.3114170/4052.3146357/4051.1444128/4050.3925815/4050.4086
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018145
(v2.0)
Rdx19684
465/1720.9181300/1720.6832155/1723.3619291/1722.073954/1720.3784307/1720.2352
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018145
(v2.0)
Rdx19684
33.85711130.5
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018145
(v2.0)
Rdx19684
8.25817610.87
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017627
(v1.0)
RdxNM_001104616,NM_001104617,NM_00904119684
718.423102.55149.919933.006542.1249
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017627
(v1.0)
RdxNM_001104616,NM_001104617,NM_00904119684
883.962137.39470.24847.620559.4064
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0017627
(v1.0)
RdxNM_001104616,NM_001104617,NM_00904119684
751.1777.7512111.886
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0017627
(v1.0)
RdxNM_001104616,NM_001104617,NM_00904119684
733.223101.52274.2755
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0017627
(v1.0)
RdxNM_001104616,NM_001104617,NM_00904119684
276.589139.425
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0017627
(v1.0)
RdxNM_001104616,NM_001104617,NM_00904119684
751.6137.6450281.4628
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0017627
(v1.0)
RdxNM_001104616,NM_001104617,NM_00904119684
46.21831.869147.9235
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0017627
(v1.0)
RdxNM_001104616,NM_001104617,NM_00904119684
85.7324143.404
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0017627
(v1.0)
RdxNM_001104616,NM_001104617,NM_00904119684
396.74433.4868
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0017627
(v1.0)
RdxNM_001104616,NM_001104617,NM_00904119684
91.4821376.41
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0017627
(v1.0)
8319H3063F08-3Mm.7051Rdx19684
U010482NAP121370-001Rdx;TC904556,TC874826P26043U,F,23.78333.78223.13722.95222.45392.86552.9613
0017627
(v1.0)
11367H3114B04-3Rdx19684
U010482NAP121370-001Rdx;TC904556,TC874826P26043U,F,24.33023.94033.07233.3022.72723.09543.0737
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0017627
(v1.0)
1416179_a_atMm.245746RdxNM_009041.3,NM_001104616.1,NM_001104617.119684
2253.9752915.575857.25147.625459.3
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0017627
(v1.0)
A_51_P430950RdxNM_00904119684
11P0.5090.0937P
0017627
(v1.0)
A_52_P571684RdxNM_00904119684
11P0.550.129P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0017627
(v1.0)
Rdx19684
625543573406188