DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0017678
GeneRexo2
SynonymsSfn
Smfn
Desc.REX2, RNA exonuclease 2 homolog (S. cerevisiae)
LocusNM_024233 chr9:48276619-48288716(-)
DB links


Entrez 104444
MGI 1888981
Ensembl ENSMUSG00000032026
Featureprotein-coding
GO(BP)
  •   1 Terms
      nucleobase-containing compound metabolic process (GO:0006139)
GO(MF)
GO(CC)
KEGG
  •   1 Terms
      Ribosome biogenesis in eukaryotes (mmu03008)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018198
(v2.0)
Rexo2NM_024233104444
54.075518.954233.54036.431376.3504913.865366.518329.39915.2768316.4996
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0017678
(v1.0)
Rexo2104444
Minor ZGA0.99107
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018198
(v2.0)
Rexo2104444
698/4510.117531/4510.1191517/4513.76261855/4513.364342/451-1.3462249/451-1.4508
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018198
(v2.0)
Rexo2104444
377/1890.4812274/1890.4177465/1894.81321600/1894.394727/189-0.7285157/189-0.8607
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018198
(v2.0)
Rexo2104444
78.392815450.9
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018198
(v2.0)
Rexo2104444
12.97838615.09
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017678
(v1.0)
Rexo2NM_024233104444
19.701223.1544.799914.4141847.657
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017678
(v1.0)
Rexo2NM_024233104444
29.499829.13377.048337.4890468.385
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0017678
(v1.0)
Rexo2NM_024233104444
20.599419.77625.2615
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0017678
(v1.0)
Rexo2NM_024233104444
20.107122.921521.735
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0017678
(v1.0)
Rexo2NM_024233104444
54.664468.2732
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0017678
(v1.0)
Rexo2NM_024233104444
20.611419.505123.8383
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0017678
(v1.0)
Rexo2NM_024233104444
4.443974.262073.6598
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0017678
(v1.0)
Rexo2NM_024233104444
6.173175.83831
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0017678
(v1.0)
Rexo2NM_024233104444
48.324522.4635
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0017678
(v1.0)
Rexo2NM_024233104444
44.394550.394
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0017678
(v1.0)
6399H3024E07-3Mm.21911Smfn104444
Smfn3.83893.79163.58333.65673.6533.69053.8165
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0017678
(v1.0)
1451259_atMm.21911Rexo2NM_024233.3104444
481.825822413.025203.625366.275
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0017678
(v1.0)
A_51_P116088SmfnNM_024233104444
11P0.8270.309P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0017678
(v1.0)
Rexo2104444
111112