DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0017688
GeneRfng
Synonymsradical fringe
Desc.RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
LocusNM_009053 chr11:120642059-120645518(-)
DB links


Entrez 19719
MGI 894275
Ensembl ENSMUSG00000025158
Vega OTTMUSG00000004135
Featureprotein-coding
GO(BP)
GO(MF)
  •   4 Terms
      transferase activity (GO:0016740)
      transferase activity, transferring glycosyl groups (GO:0016757)
      O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity (GO:0033829)
      metal ion binding (GO:0046872)
GO(CC)
KEGG
  •   2 Terms
      Other types of O-glycan biosynthesis (mmu00514)
      Notch signaling pathway (mmu04330)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018208
(v2.0)
RfngNM_00905319719
9.52916.506855.8885511.495814.18819.569063.191949.4674212.80418.76855
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0017688
(v1.0)
Rfng19719
MGA0.9908
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018208
(v2.0)
Rfng19719
835/5360.1265417/536-0.4773125/5361.48292/5360.453244/536-1.5276368/536-1.1386
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018208
(v2.0)
Rfng19719
500/2110.7292215/211-0.0887110/2112.5937273/2111.691112/211-1.9911167/211-0.9305
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018208
(v2.0)
Rfng19719
97.14714268.41
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018208
(v2.0)
Rfng19719
25.48266738.03
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017688
(v1.0)
RfngNM_00905319719
6.766364.071858.559149.810442.19149
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017688
(v1.0)
RfngNM_00905319719
42.805427.245153.154848.26469.79608
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0017688
(v1.0)
RfngNM_00905319719
7.074853.484894.44247
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0017688
(v1.0)
RfngNM_00905319719
6.905754.030967.00639
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0017688
(v1.0)
RfngNM_00905319719
23.27943.1311
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0017688
(v1.0)
RfngNM_00905319719
7.078963.437167.68438
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0017688
(v1.0)
RfngNM_00905319719
7.924439.472378.84534
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0017688
(v1.0)
RfngNM_00905319719
102.584113.72
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0017688
(v1.0)
RfngNM_00905319719
4.047899.58059
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0017688
(v1.0)
RfngNM_00905319719
1.694361.86129
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0017688
(v1.0)
5171AF015770.1Mm.871Rfng19719
U033734NAP008015-001Rfng;TC826743,TC826741O090091.8681.99431.69951.97012.26551.84172.2264
0017688
(v1.0)
13577J0057D07-3Mm.871Rfng19719
U033734NAP008015-001Rfng;TC826741O090093.63563.58243.8094.02964.00733.99993.9383
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0017688
(v1.0)
1460704_atMm.871RfngNM_009053.219719
000212.650
Agilent44K N/A
Proteome N/A