DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0017770
GeneRhot1
SynonymsArht1
FLJ11040
Miro1
Desc.ras homolog gene family, member T1
LocusNM_001163354 chr11:80022557-80081409(+)
NM_001163355 chr11:80022557-80081409(+)
NM_021536 chr11:80022557-80081409(+)
DB links


Entrez 59040
MGI 1926078
Ensembl ENSMUSG00000017686
Vega OTTMUSG00000000219
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018290
(v2.0)
Rhot1NM_001163354,NM_001163355,NM_02153659040
8.0133867.765642.846843.32333.761712.526920.15531.122927.688313.9552
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0017770
(v1.0)
Rhot159040
Maternal RNA0.94134
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018290
(v2.0)
Rhot159040
612/3590.2561420/3590.1099101/3591.7377197/3590.462773/359-0.2372507/359-0.1011
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018290
(v2.0)
Rhot159040
311/1390.6453194/1390.362598/1392.9907183/1391.7120/139-0.7114195/139-0.1101
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018290
(v2.0)
Rhot159040
55.194612544.16
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018290
(v2.0)
Rhot159040
16.51748319.9
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017770
(v1.0)
Rhot1NM_001163354,NM_001163355,NM_02153659040
70.424529.479832.266923.41114.1944
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017770
(v1.0)
Rhot1FR137706,NM_001163354,NM_001163355,NM_02153659040
727.061344.194347.261300.645208.571
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0017770
(v1.0)
Rhot1NM_001163354,NM_001163355,NM_02153659040
73.63532.9304432.1631
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0017770
(v1.0)
Rhot1NM_001163354,NM_001163355,NM_02153659040
71.875429.183822.8872
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0017770
(v1.0)
Rhot1NM_001163354,NM_001163355,NM_02153659040
228.04168.638
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0017770
(v1.0)
Rhot1NM_001163354,NM_001163355,NM_02153659040
73.67812.8903125.1019
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0017770
(v1.0)
Rhot1NM_001163354,NM_001163355,NM_02153659040
29.874122.604319.1447
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0017770
(v1.0)
Rhot1NM_001163354,NM_001163355,NM_02153659040
213.322180.036
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0017770
(v1.0)
Rhot1NM_001163354,NM_001163355,NM_02153659040
79.164938.2976
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0017770
(v1.0)
Rhot1NM_001163354,NM_001163355,NM_02153659040
46.888267.0839
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0017770
(v1.0)
19561L0280H10-3Mm.245412210403N23Rik59040
U013050NAP000423-0012210403N23Rik;TC889307,TC793525,TC793519Q922N0U,F,23.58193.41292.97123.20222.98463.01642.9106
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0017770
(v1.0)
1423533_a_atMm.261491Rhot1NM_001163355.1,NM_001163354.1,NM_021536.759040
1517.5751970.11615.575366.075367.225
0017770
(v1.0)
1440853_atMm.261491Rhot1NM_001163355.1,NM_001163354.1,NM_021536.759040
619.15614.8360.7750203.075
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0017770
(v1.0)
A_51_P241159Rhot1NM_02153659040
11P1.9790.0924P
0017770
(v1.0)
A_52_P232663Rhot1NM_02153659040
11P2.9560.0628P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0017770
(v1.0)
Rhot159040
3.51155.5178