DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0017813
GeneRif1
SynonymsD2Ertd145e
Desc.Rap1 interacting factor 1 homolog (yeast)
LocusNM_175238 chr2:51928357-51977901(+)
DB links


Entrez 51869
MGI 1098622
Ensembl ENSMUSG00000036202
Vega OTTMUSG00000012437
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018333
(v2.0)
Rif1NM_17523851869
2.17518147.796213.783285.14262.37734.890516.9988134.391244.94534.1055
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0017813
(v1.0)
Rif151869
2-Cell Transient0.99673
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018333
(v2.0)
Rif151869
644/3570.3375449/3570.21472/3571.2629194/3570.448759/357-0.5318368/357-0.5537
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018333
(v2.0)
Rif151869
313/1500.5454204/1500.325565/1502.3044173/1501.521416/150-1.1231112/150-1.011
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018333
(v2.0)
Rif151869
38.40111333.98
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018333
(v2.0)
Rif151869
9.79978012.25
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017813
(v1.0)
Rif1NM_17523851869
153.546147.588212.221181.80212.0242
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017813
(v1.0)
Rif1NM_17523851869
2256.581416.92111.532266.99182.936
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0017813
(v1.0)
Rif1NM_17523851869
160.5460.795486161.022
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0017813
(v1.0)
Rif1NM_17523851869
156.709146.10699.4545
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0017813
(v1.0)
Rif1NM_17523851869
1317.87700.555
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0017813
(v1.0)
Rif1NM_17523851869
160.640.78459109.078
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0017813
(v1.0)
Rif1NM_17523851869
196.484175.537169.235
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0017813
(v1.0)
Rif1NM_17523851869
357.389333.432
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0017813
(v1.0)
Rif1NM_17523851869
105.224172.003
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0017813
(v1.0)
Rif1NM_17523851869
22.467741.8796
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0017813
(v1.0)
6837H3035E04-3Mm.155603D2Ertd145e51869
1.72391.91561.99182.09181.80971.71811.8571
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0017813
(v1.0)
1429490_atMm.254530Rif1NM_175238.551869
36.9553.45178.85205.52564
0017813
(v1.0)
1437179_atMm.254530Rif1NM_175238.551869
1844.0754229.8753187.2252793.1251392.7
0017813
(v1.0)
1442939_atMm.254530Rif1NM_175238.551869
390.5753.675877.275606.5297.95
0017813
(v1.0)
1438516_atMm.254530Rif1NM_175238.551869
00323.3541.125342.3
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0017813
(v1.0)
A_51_P305693Rif1NM_17523851869
11P0.7320.198P
0017813
(v1.0)
A_51_P439711Rif1NM_17523851869
11P0.2350.0877P
Proteome N/A