DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:0017813

Gene

Rif1

Synonyms

D2Ertd145e

Description

Rap1 interacting factor 1 homolog (yeast)

Locus

NM_175238 UCSC: chr2:51928357-51977901(+) OLP: chr2:51928357-51977901(+)

DB links

Entrez 51869
MGI 1098622
Ensembl ENSMUSG00000036202
Vega OTTMUSG00000012437

Feature

protein-coding

GO_BP

3 Terms

GO_MF

1 Terms

GO_CC

7 Terms

KEGG

see DBTMEE:2018333 (v2.0)

SPR_Histone_Erkek_5KaroundTSS

N/A

SPR_Histone_Erkek_2KaroundTSS

N/A

SPR_Methy_Kobayashi_5KaroundTSS

N/A

SPR_Methy_Kobayashi_2KaroundTSS

N/A

SOLiD_OocyteTo4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	MEF_FPKM
0017813 (v1.0)	Rif1	NM_175238	51869	153.546	147.588	212.221	181.802	12.0242

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	1C_FPKM
0017813 (v1.0)	Rif1	NM_175238	51869	160.546	0.795486	161.022

SOLiD_Partheno1C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	1C_FPKM	p1C_FPKM
0017813 (v1.0)	Rif1	NM_175238	51869	156.709	146.106	99.4545

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	p1C_FPKM
0017813 (v1.0)	Rif1	NM_175238	51869	160.64	0.78459	109.078

SOLiD_Partheno4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	2C_FPKM	4C_FPKM	p4C_FPKM
0017813 (v1.0)	Rif1	NM_175238	51869	196.484	175.537	169.235

Illumina_Oo_2C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	2C_FPKM
0017813 (v1.0)	Rif1	NM_175238	51869	105.224	172.003

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_1_1	Oo_2_1
0017813 (v1.0)	Rif1	NM_175238	51869	22.4677	41.8796

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0017813 (v1.0)	6837	H3035E04-3	Mm.155603	D2Ertd145e	51869							1.7239	1.9156	1.9918	2.0918	1.8097	1.7181	1.8571

DBTMEE	Probe_ID	Unigene	Gene	RefSeq	Entrez	Oo	1C	2C	8C	Blastocyst
0017813 (v1.0)	1429490_at	Mm.254530	Rif1	NM_175238.5	51869	36.95	53.45	178.85	205.525	64
0017813 (v1.0)	1437179_at	Mm.254530	Rif1	NM_175238.5	51869	1844.07	4229.88	3187.23	2793.12	1392.7
0017813 (v1.0)	1442939_at	Mm.254530	Rif1	NM_175238.5	51869	390.5	753.675	877.275	606.5	297.95
0017813 (v1.0)	1438516_at	Mm.254530	Rif1	NM_175238.5	51869	0	0	323.3	541.125	342.3

DBTMEE	Probe_ID	Gene	Acc	Entrez	Oo1_xFold	Oo1_pVal	Oo1_Flag	Oo2_xFold	Oo2_pVal	Oo2_Flag
0017813 (v1.0)	A_51_P305693	Rif1	NM_175238	51869	1	1	P	0.732	0.198	P
0017813 (v1.0)	A_51_P439711	Rif1	NM_175238	51869	1	1	P	0.235	0.0877	P

N/A