DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0017846
GeneRlim
SynonymsHa1r
Rnf12
Desc.ring finger protein, LIM domain interacting
LocusNM_011276 chrX:101152506-101176623(-)
DB links


Entrez 19820
MGI 1342291
Ensembl ENSMUSG00000056537
Vega OTTMUSG00000018399
Featureprotein-coding
GO(BP)
  •   7 Terms
      negative regulation of transcription from RNA polymerase II promoter (GO:0000122)
      transcription, DNA-dependent (GO:0006351)
      regulation of transcription, DNA-dependent (GO:0006355)
      ubiquitin-dependent protein catabolic process (GO:0006511)
      protein ubiquitination (GO:0016567)
      negative regulation of sequence-specific DNA binding transcription factor activity (GO:0043433)
      random inactivation of X chromosome (GO:0060816)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018367
(v2.0)
RlimNM_01127619820
11.101452.0898118.758142.67292.489923.79340.939284.0536133.86823.9041
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0017846
(v1.0)
Rlim19820
Major ZGA0.97137
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018367
(v2.0)
Rlim19820
363/1690.5873296/1690.6891416/1694.80411530/1694.489352/1690.3497261/1690.0275
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018367
(v2.0)
Rlim19820
213/721.0417163/721.0523406/725.87531360/725.52234/72-1.871326/72-2.007
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018367
(v2.0)
Rlim19820
40.721113230.85
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018367
(v2.0)
Rlim19820
8.3888948.92
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017846
(v1.0)
RlimNM_01127619820
54.122682.0136106.23764.03428.9077
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017846
(v1.0)
RlimNM_01127619820
90.6967124.75171.101105.46443.1351
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0017846
(v1.0)
RlimNM_01127619820
56.59024.0598889.4786
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0017846
(v1.0)
RlimNM_01127619820
55.237681.190162.1432
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0017846
(v1.0)
RlimNM_01127619820
140.949139.207
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0017846
(v1.0)
RlimNM_01127619820
56.6234.0042868.1565
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0017846
(v1.0)
RlimNM_01127619820
98.358961.827492.4208
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0017846
(v1.0)
RlimNM_01127619820
109.378156.711
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0017846
(v1.0)
RlimNM_01127619820
55.796866.6431
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0017846
(v1.0)
RlimNM_01127619820
10.118911.4207
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0017846
(v1.0)
10356H3094F09-3Mm.44069Rnf1219820
U039604NAP120907-001Ha1r;Rnf12;TC920885,TC920883,TC920882Q91X19U,F,23.28823.18733.37023.3893.35113.29073.2974
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0017846
(v1.0)
1417250_atMm.427762RlimNM_011276.319820
187.05272.975257.275233.1363.425
0017846
(v1.0)
1418730_atMm.427762RlimNM_011276.319820
213.4250536.700
0017846
(v1.0)
1439403_x_atMm.427762RlimNM_011276.319820
135.55237.375215.875250.65239.15
0017846
(v1.0)
1440850_atMm.427762RlimNM_011276.319820
000233.75355.45
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0017846
(v1.0)
A_51_P363668Rnf12NM_01127619820
11P1.0440.739P
0017846
(v1.0)
A_52_P450045Rnf12NM_01127619820
11P1.0760.599P
Proteome N/A