DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0017881
GeneRnf111
SynonymsArkadia
Desc.ring finger 111
LocusNM_033604 chr9:70273236-70351532(-)
DB links


Entrez 93836
MGI 1934919
Ensembl ENSMUSG00000032217
Featureprotein-coding
GO(BP)
  •   7 Terms
      protein polyubiquitination (GO:0000209)
      multicellular organismal development (GO:0007275)
      pattern specification process (GO:0007389)
      positive regulation of transforming growth factor beta receptor signaling pathway (GO:0030511)
      ubiquitin-dependent SMAD protein catabolic process (GO:0030579)
      positive regulation of protein ubiquitination (GO:0031398)
      positive regulation of transcription, DNA-dependent (GO:0045893)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018407
(v2.0)
Rnf111NM_03360493836
7.6977838.725688.593681.358745.9576.673949.2427592.558537.85385.95786
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0017881
(v1.0)
Rnf11193836
Minor ZGA0.97305
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018407
(v2.0)
Rnf11193836
612/3650.2322432/3650.1266111/3651.8495334/3651.197628/365-1.6123186/365-1.5642
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018407
(v2.0)
Rnf11193836
341/1330.8407211/1330.5462103/1333.1203308/1332.52042/133-3.45740/133-2.2899
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018407
(v2.0)
Rnf11193836
37.675310336.58
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018407
(v2.0)
Rnf11193836
4.3367666.57
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017881
(v1.0)
Rnf111NM_03360493836
40.272660.979160.483631.81196.42488
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017881
(v1.0)
Rnf111FR345695,NM_03360493836
39.309152.388452.514428.47675.52689
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0017881
(v1.0)
Rnf111NM_03360493836
42.10872.8151666.5295
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0017881
(v1.0)
Rnf111NM_03360493836
41.102260.366868.561
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0017881
(v1.0)
Rnf111FR345695,NM_03360493836
53.208799.0937
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0017881
(v1.0)
Rnf111NM_03360493836
42.13322.776675.1953
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0017881
(v1.0)
Rnf111NM_03360493836
55.998430.715726.2208
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0017881
(v1.0)
Rnf111FR345695,NM_03360493836
28.169423.676
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0017881
(v1.0)
Rnf111NM_03360493836
25.001742.3157
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0017881
(v1.0)
Rnf111NM_03360493836
13.049627.7529
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0017881
(v1.0)
11839H3123H04-3Mm.29783Ark-pending93836
U031056NAP094280-001TC826511Q99ML9U,F,24.01964.05773.15263.23793.03323.27123.3133
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0017881
(v1.0)
1423304_a_atMm.29783Rnf111NM_033604.293836
393618.425518.575400286.025
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0017881
(v1.0)
A_52_P207151Rnf111NM_03360493836
11P0.8590.371P
Proteome N/A