DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0017944
GeneRnf34
Synonymsphafin 1
Desc.ring finger protein 34
LocusNM_030564 chr5:123300197-123318954(+)
DB links


Entrez 80751
MGI 2153340
Ensembl ENSMUSG00000029474
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018472
(v2.0)
Rnf34NM_03056480751
15.3758143.076261.32628.703722.660230.908113.0116189.12729.735230.1867
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0017944
(v1.0)
Rnf3480751
Minor ZGA0.99062
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018472
(v2.0)
Rnf3480751
661/3780.2927389/378-0.0746169/3782.4026417/3781.466833/378-1.4328227/378-1.3293
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018472
(v2.0)
Rnf3480751
327/1700.4288174/170-0.0822161/1703.4321403/1702.55896/170-2.579277/170-1.7223
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018472
(v2.0)
Rnf3480751
76.349915349.9
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018472
(v2.0)
Rnf3480751
15.518518.25
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017944
(v1.0)
Rnf34NM_03056480751
148.719180.96521.400615.71039.1847
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017944
(v1.0)
Rnf34NM_03056480751
503.273859.62857.310254.125935.0365
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0017944
(v1.0)
Rnf34NM_03056480751
155.55.62309197.437
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0017944
(v1.0)
Rnf34NM_03056480751
151.783179.148140.028
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0017944
(v1.0)
Rnf34NM_03056480751
872.701531.137
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0017944
(v1.0)
Rnf34NM_03056480751
155.595.54608153.578
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0017944
(v1.0)
Rnf34NM_03056480751
19.813615.168920.6268
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0017944
(v1.0)
Rnf34NM_03056480751
63.175100.751
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0017944
(v1.0)
Rnf34NM_03056480751
49.718913.2531
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0017944
(v1.0)
Rnf34NM_03056480751
255.893262.988
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0017944
(v1.0)
12477H3144C08-3Mm.7780Rnf3480751
U006152NAP110215-1Rnf34;TC886178Q99KR6U,F,24.11084.17723.46683.58552.80882.94462.6848
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0017944
(v1.0)
1415791_atMm.388529Rnf34NM_030564.180751
1551.72842.175564.4249.875373
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0017944
(v1.0)
A_51_P509211Rnf34NM_03056480751
11P1.0170.891P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0017944
(v1.0)
Rnf3480751
001001