DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0017945
GeneRnf38
SynonymsOip1
Desc.ring finger protein 38
LocusNM_175201 chr4:44139084-44180410(-)
NM_001038993 chr4:44139084-44181155(-)
DB links


Entrez 73469
MGI 1920719
Ensembl ENSMUSG00000035696
Vega OTTMUSG00000006919
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018473
(v2.0)
Rnf38NM_001038993,NM_17520173469
120.082200.484325.087106.40126.94148.7775.24666307.82629.47227.28527
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0017945
(v1.0)
Rnf3873469
Minor ZGA0.96033
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018473
(v2.0)
Rnf3873469
857/3330.849609/3330.753646/3334.50772940/3334.463126/333-1.5846147/333-1.7686
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018473
(v2.0)
Rnf3873469
460/1491.1083304/1490.908518/1495.28851957/1495.02316/149-2.393858/149-1.933
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018473
(v2.0)
Rnf3873469
34.250710831.71
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018473
(v2.0)
Rnf3873469
4.0461735.54
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017945
(v1.0)
Rnf38NM_001038993,NM_17520173469
208.428223.99879.17618.65813.63863
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017945
(v1.0)
Rnf38NM_001038993,NM_17520173469
299.229256.53699.405936.902111.3519
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0017945
(v1.0)
Rnf38NM_001038993,NM_17520173469
217.93143.9153244.387
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0017945
(v1.0)
Rnf38NM_001038993,NM_17520173469
212.722221.749227.668
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0017945
(v1.0)
Rnf38NM_001038993,NM_17520173469
284.087390.185
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0017945
(v1.0)
Rnf38NM_001038993,NM_17520173469
218.05743.3138249.698
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0017945
(v1.0)
Rnf38NM_001038993,NM_17520173469
73.304618.015120.4793
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0017945
(v1.0)
Rnf38NM_001038993,NM_17520173469
25.430626.6198
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0017945
(v1.0)
Rnf38NM_001038993,NM_17520173469
428.814186.221
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0017945
(v1.0)
Rnf38NM_001038993,NM_17520173469
93.0877105.17
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0017945
(v1.0)
15756K0237D08-3Mm.453621700065B19Rik73469
U025006NAP003958-0021700065B19Rik;TC930327,TC930322U,F,22.572.56992.58452.42562.59192.50412.4805
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0017945
(v1.0)
1428101_atMm.262859Rnf38NM_175201.5,NM_001038993.373469
746.0251372.85580.725171.37589.225
0017945
(v1.0)
1431993_a_atMm.262859Rnf38NM_175201.5,NM_001038993.373469
0273.225286.9500
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0017945
(v1.0)
A_51_P214755Rnf38NM_17520173469
11P1.6470.134P
Proteome N/A