DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0017947
GeneRnf4
SynonymsGtrgeo8
Desc.ring finger protein 4
LocusNM_011278 chr5:34679039-34696079(+)
DB links


Entrez 19822
MGI 1201691
Ensembl ENSMUSG00000029110
Featureprotein-coding
GO(BP)
  •   14 Terms
      transcription, DNA-dependent (GO:0006351)
      regulation of transcription, DNA-dependent (GO:0006355)
      protein ubiquitination (GO:0016567)
      proteasomal ubiquitin-dependent protein catabolic process (GO:0043161)
      positive regulation of transcription, DNA-dependent (GO:0045893)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
      response to arsenic-containing substance (GO:0046685)
      protein autoubiquitination (GO:0051865)
      protein K63-linked ubiquitination (GO:0070534)
      protein K48-linked ubiquitination (GO:0070936)
      protein K11-linked ubiquitination (GO:0070979)
      protein K6-linked ubiquitination (GO:0085020)
      regulation of spindle assembly (GO:0090169)
      regulation of kinetochore assembly (GO:0090234)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018475
(v2.0)
Rnf4NM_01127819822
34.4453143.4258.762299.006225.791111.92175.8624259.09209.429109.028
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0017947
(v1.0)
Rnf419822
Major ZGA0.96587
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018475
(v2.0)
Rnf419822
741/3500.568554/3500.5451047/3505.13413053/3504.446214/350-2.5036128/350-2.0377
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018475
(v2.0)
Rnf419822
417/1540.9199292/1540.8028925/1546.07972358/1545.24516/154-2.440171/154-1.6953
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018475
(v2.0)
Rnf419822
32.962715221.69
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018475
(v2.0)
Rnf419822
4.94031224.05
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017947
(v1.0)
Rnf4NM_01127819822
149.066179.333222.79156.42453.8252
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017947
(v1.0)
Rnf4NM_01127819822
1686.118690.627758.528292.954.764
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0017947
(v1.0)
Rnf4NM_01127819822
155.86212.597195.656
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0017947
(v1.0)
Rnf4NM_01127819822
152.137177.532191.921
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0017947
(v1.0)
Rnf4NM_01127819822
256.421395.972
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0017947
(v1.0)
Rnf4NM_01127819822
155.95212.4245210.492
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0017947
(v1.0)
Rnf4NM_01127819822
206.268151.034144.674
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0017947
(v1.0)
Rnf4NM_01127819822
8235.076801.09
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0017947
(v1.0)
Rnf4NM_01127819822
83.259144.22
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0017947
(v1.0)
Rnf4NM_01127819822
71.087444.8806
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0017947
(v1.0)
18388L0205B06-3Mm.21281Rnf419822
U005486NAP092906-001Rnf4;TC841626,TC798914,TC798913Q9QZS2U,F,24.2484.42334.11574.36673.86554.03354.061
0017947
(v1.0)
21228L0840H08-3Mm.21281Rnf419822
U005486NAP031406-1Rnf4;TC798915Q9QZS2U,F,22.95133.09153.53723.52572.90453.17583.0136
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0017947
(v1.0)
1423654_a_atMm.21281Rnf4NM_011278.419822
626.825634.05902.825538.4385.55
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0017947
(v1.0)
A_51_P215540Rnf4NM_01127819822
11P1.0220.864P
0017947
(v1.0)
A_52_P189567Rnf4NM_01127819822
11P0.5870.144P
Proteome N/A